Unequal sequence and quality error

[samlipworth]

Hi - attempting to index some ONT fastqs but get error fastx: unequal seqence and quality. There is nothing wrong with the reads and I can run LexicMap without issue on assemblies.. Is it the case that the tool only works with Illumina?

[shenwei356]

You need to fix the fastq file with malformed records, using tools such as seqkit sana.