Update MANIFEST and associated author test

shawnlaffan · Dec 21, 2023 · 32d4326 · 32d4326
1 parent 47d42f1
commit 32d4326
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Showing 3 changed files with 78 additions and 60 deletions.
diff --git a/MANIFEST b/MANIFEST
@@ -1,4 +1,4 @@
-ac.bds.bps
+.cirrus_disabled.yml
 bin/Biodiverse_icon.ico
 bin/BiodiverseGUI.pl
 bin/load_and_randomise.pl
@@ -37,6 +37,7 @@ biodiverse.iml
 Biodiverse_extensions.txt
 BiodiverseGUI.bat
 cpanfile
+csvcheck.pl
 data/coastline_lamberts.dbf
 data/coastline_lamberts.prj
 data/coastline_lamberts.sbn
@@ -83,6 +84,7 @@ example_scripts/run_many_clusters_and_export_to_nexus.pl
 example_scripts/run_num_labels.pl
 example_scripts/use_label_ranges_as_spatial_conditions.pl
 extent_test.tif
+goocanvas2_test.pl
 Installation.txt
 lib/App/Biodiverse.pm
 lib/Biodiverse/BaseData.pm
@@ -94,6 +96,7 @@ lib/Biodiverse/BaseStruct/Export.pm
 lib/Biodiverse/Cluster.pm
 lib/Biodiverse/Common.pm
 lib/Biodiverse/Config.pm
+lib/Biodiverse/Config/PARModules.pm
 lib/Biodiverse/ElementProperties.pm
 lib/Biodiverse/Exception.pm
 lib/Biodiverse/GUI/BasedataImport.pm
@@ -259,6 +262,9 @@ t/AED_data.xlsx
 t/data/años.txt
 t/data/años_mx.txt
 t/data/años_mx_sparse.txt
+t/data/a�os.txt
+t/data/a�os_mx.txt
+t/data/a�os_mx_sparse.txt
 't/data/polygon data.CPG'
 't/data/polygon data.dbf'
 't/data/polygon data.prj'
@@ -291,6 +297,11 @@ t/data/polygon_data_single_partx.shx
 't/data/polyline data.shx'
 t/data/rast_nodata_is_nan.tfw
 t/data/rast_nodata_is_nan.tif
+t/data/test_spreadsheet_import.ods
+t/data/test_spreadsheet_import.xls
+t/data/test_spreadsheet_import.xlsx
+t/data/test_spreadsheet_import_dms_coords.xlsx
+t/data/test_spreadsheet_import_matrix_form.xlsx
 t/dms_latlon.dbf
 t/dms_latlon.shp
 t/dms_latlon.shx
@@ -314,11 +325,6 @@ t/ex_rasters/example_small.bds
 t/lib/Biodiverse/TestHelpers.pm
 t/lib/Utils.pm
 t/README.txt
-t/test_spreadsheet_import.ods
-t/test_spreadsheet_import.xls
-t/test_spreadsheet_import.xlsx
-t/test_spreadsheet_import_dms_coords.xlsx
-t/test_spreadsheet_import_matrix_form.xlsx
 xt/.perlcritic-history
 xt/00-roundtrip-self-referential-structure.t
 xt/01-has-versions.t

diff --git a/MANIFEST.bak b/MANIFEST.bak
@@ -1,3 +1,4 @@
+.cirrus_disabled.yml
 bin/Biodiverse_icon.ico
 bin/BiodiverseGUI.pl
 bin/load_and_randomise.pl
@@ -32,9 +33,11 @@ bin/ui/vboxRandomisePage.ui
 bin/ui/wndCellPopup.ui
 bin/ui/wndMain.ui
 bin/ui/wndOverlays.ui
+biodiverse.iml
 Biodiverse_extensions.txt
 BiodiverseGUI.bat
 cpanfile
+csvcheck.pl
 data/coastline_lamberts.dbf
 data/coastline_lamberts.prj
 data/coastline_lamberts.sbn
@@ -90,6 +93,7 @@ lib/Biodiverse/BaseStruct/Export.pm
 lib/Biodiverse/Cluster.pm
 lib/Biodiverse/Common.pm
 lib/Biodiverse/Config.pm
+lib/Biodiverse/Config/PARModules.pm
 lib/Biodiverse/ElementProperties.pm
 lib/Biodiverse/Exception.pm
 lib/Biodiverse/GUI/BasedataImport.pm
@@ -177,80 +181,84 @@ lib/BiodiverseX/Indices/IEI.pm
 lib/BiodiverseX/Indices/Phylogenetic.pm
 LICENSE
 Makefile.PL
-MANIFEST			This list of files
+MANIFEST
 MANIFEST.SKIP
 README.md
+run_yath.sh
 t/00-load.t
-t/01-clone_save_reload.t
-t/01-csv_guesswork.t
+t/01-clone-save-reload.t
+t/01-csv-guesswork.t
 t/02-unicode-file-names.t
 t/10-ElementProperties.t
+t/11-BaseData-exclusions.t
+t/11-BaseData-group-props-from-raster.t
 t/11-BaseData-import-feature-data.t
 t/11-BaseData-import-spreadsheet.t
 t/11-BaseData-reintegrate-after-rand.t
+t/11-BaseData-reorder-axes.t
 t/11-BaseData.t
-t/11-BaseData_exclusions.t
-t/11-BaseData_group_props_from_raster.t
-t/11-BaseData_reorder_axes.t
 t/12-BaseStruct-export.t
 t/12-BaseStruct.t
 t/13-BootstrapBlock.t
 t/13-Tree.t
-t/20-Biodiverse_Statistics-descr.t
-t/20-Biodiverse_Statistics.t
+t/20-Biodiverse-Statistics-descr.t
+t/20-Biodiverse-Statistics.t
 t/21-ReadNexus.t
+t/22-SpatialConditions-block-select.t
+t/22-SpatialConditions-main.t
+t/22-SpatialConditions-metadata.t
+t/22-SpatialConditions-rectangle.t
+t/22-SpatialConditions-side-in-line.t
+t/22-SpatialConditions-side-left.t
+t/22-SpatialConditions-side-right.t
+t/22-SpatialConditions-sp-output-list-value.t
+t/22-SpatialConditions-sp-points-in-clusters.t
 t/22-SpatialConditions2.t
 t/22-SpatialConditions3.t
 t/22-SpatialConditions4.t
 t/22-SpatialConditions5.t
-t/22-SpatialConditions_block_select.t
-t/22-SpatialConditions_main.t
-t/22-SpatialConditions_metadata.t
-t/22-SpatialConditions_rectangle.t
-t/22-SpatialConditions_side_in_line.t
-t/22-SpatialConditions_side_left.t
-t/22-SpatialConditions_side_right.t
-t/22-SpatialConditions_sp_output_list_value.t
-t/22-SpatialConditions_sp_points_in_clusters.t
 t/23-Indices.t
-t/24-Indices_element-properties-group.t
-t/24-Indices_element-properties-label.t
-t/24-Indices_element-properties-label_gistar_range_wtd.t
-t/24-Indices_endemism.t
-t/24-Indices_hierarchical-labels.t
-t/24-Indices_inter-event-interval-statistics.t
-t/24-Indices_lists-and-counts.t
-t/24-Indices_lists_and_counts_rank_relative_abundances.t
-t/24-Indices_matrix.t
-t/24-Indices_numeric-labels.t
-t/24-Indices_phylocom.results
-t/24-Indices_phylocom.t
-t/24-Indices_phylocom_nri_nti.t
-t/24-Indices_phylogenetic-pd-endemism.t
-t/24-Indices_phylogenetic.t
-t/24-Indices_phylogenetic_local_PD.t
-t/24-Indices_phylogenetic_relative.t
-t/24-Indices_phylogenetic_turnover.t
-t/24-Indices_rarity.t
-t/24-Indices_richness_estimators.t
-t/24-Indices_RW_turnover.t
-t/24-Indices_taxonomic-dissimilarity-and-comparison.t
-t/24-Indices_taxonomic_distinctness.t
-t/24-Indices_turnover_with_empty_groups.t
+t/24-Indices-element-properties-group.t
+t/24-Indices-element-properties-label-gistar-range-wtd.t
+t/24-Indices-element-properties-label.t
+t/24-Indices-endemism.t
+t/24-Indices-hierarchical-labels.t
+t/24-Indices-inter-event-interval-statistics.t
+t/24-Indices-lists-and-counts-rank-relative-abundances.t
+t/24-Indices-lists-and-counts.t
+t/24-Indices-matrix.t
+t/24-Indices-numeric-labels.t
+t/24-Indices-phylocom-nri-nti.t
+t/24-Indices-phylocom.t
+t/24-Indices-phylogenetic-local-PD.t
+t/24-Indices-phylogenetic-pd-endemism.t
+t/24-Indices-phylogenetic-relative.t
+t/24-Indices-phylogenetic-turnover.t
+t/24-Indices-phylogenetic.t
+t/24-Indices-rarity.t
+t/24-Indices-richness-estimators.t
+t/24-Indices-RW-turnover.t
+t/24-Indices-taxonomic-dissimilarity-and-comparison.t
+t/24-Indices-taxonomic-distinctness.t
+t/24-Indices-turnover-with-empty-groups.t
 t/25-Matrix.t
 t/26-Cluster.t
 t/26-Cluster2.t
 t/26-RegionGrower.t
 t/27-Spatial.t
 t/28-Randomisation.t
 t/28-Randomisation2.t
+t/29-CANAPE.t
 t/30-Progress.t
 t/31-Remap.t
 t/31-RemapGuesser.t
 t/aed.bps
 t/aed.nwk
 t/AED_data.csv
 t/AED_data.xlsx
+t/data/años.txt
+t/data/años_mx.txt
+t/data/años_mx_sparse.txt
 t/data/a�os.txt
 t/data/a�os_mx.txt
 t/data/a�os_mx_sparse.txt
@@ -284,6 +292,13 @@ t/data/polygon_data_single_partx.shx
 't/data/polyline data.shp'
 't/data/polyline data.shp.xml'
 't/data/polyline data.shx'
+t/data/rast_nodata_is_nan.tfw
+t/data/rast_nodata_is_nan.tif
+t/data/test_spreadsheet_import.ods
+t/data/test_spreadsheet_import.xls
+t/data/test_spreadsheet_import.xlsx
+t/data/test_spreadsheet_import_dms_coords.xlsx
+t/data/test_spreadsheet_import_matrix_form.xlsx
 t/dms_latlon.dbf
 t/dms_latlon.shp
 t/dms_latlon.shx
@@ -307,20 +322,15 @@ t/ex_rasters/example_small.bds
 t/lib/Biodiverse/TestHelpers.pm
 t/lib/Utils.pm
 t/README.txt
-t/test_spreadsheet_import.ods
-t/test_spreadsheet_import.xls
-t/test_spreadsheet_import.xlsx
-t/test_spreadsheet_import_dms_coords.xlsx
-t/test_spreadsheet_import_matrix_form.xlsx
 xt/.perlcritic-history
-xt/00-roundtrip_self_referential_structure.t
-xt/01-has_versions.t
-xt/02-versions_all_same.t
-xt/03-has_pod.t
+xt/00-roundtrip-self-referential-structure.t
+xt/01-has-versions.t
+xt/02-versions-all-same.t
+xt/03-has-pod.t
 xt/04-pod-coverage.t
 xt/05-manifest.t
 xt/06-critic.t
 xt/07-notabs.t
-xt/09-use_strict.t
-xt/changes_format.t
+xt/09-use-strict.t
+xt/changes-format.t
 xt/README.txt
diff --git a/xt/05-manifest.t b/xt/05-manifest.t
@@ -3,9 +3,11 @@ use warnings;
 use Test::CheckManifest;
 use Test::More;
 
-plan skip_all => q{We don't have a manufest yet, and need to move the gtk stuff out of the way or add to the ignore list};
+# plan skip_all => q{We don't have a manifest yet, and need to move the gtk stuff out of the way or add to the ignore list};
 
 TODO: {
-    local $TODO = q{We don't have a manufest yet, and need to move the gtk stuff out of the way or add to the ignore list};
+    local $TODO = q{Manifest test does not handle unicode file names on Windows};
     ok_manifest();
 };
+
+done_testing();