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Deprecate plink functions

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

Status: Open.

#1318 In sgkit-dev/sgkit;

· tomwhite opened on May 28, 2025

read_plink from cloud storage

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

Status: Open.

#1150 In sgkit-dev/sgkit;

· hammer opened on Dec 2, 2023

Can we use KvikIO?

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

Status: Open.

#1127 In sgkit-dev/sgkit;

· hammer opened on Sep 7, 2023

Support quantitative trait values in plink

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

Status: Open.

#1023 In sgkit-dev/sgkit;

· tomwhite opened on Feb 14, 2023

Document reading tabular pedigree formats into sgkit

documentationImprovements or additions to documentationImprovements or additions to documentation

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

Status: Open.

#1012 In sgkit-dev/sgkit;

· timothymillar opened on Jan 30, 2023

Write family information in <code>write_plink</code>

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

Status: Open.

#1010 In sgkit-dev/sgkit;

· tomwhite opened on Jan 30, 2023

Populate parent_id variable in <code>read_plink</code>

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

Status: Open.

#1009 In sgkit-dev/sgkit;

· tomwhite opened on Jan 30, 2023

Make sample_id from plink reader unique

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

Status: Open.

#1008 In sgkit-dev/sgkit;

· tomwhite opened on Jan 30, 2023

Port GFF3 I/O methods of scikit-allel to sgkit?

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

Status: Open.

#657 In sgkit-dev/sgkit;

· hammer opened on Aug 31, 2021

Genetics data IO performance stats/doc

documentationImprovements or additions to documentationImprovements or additions to documentation

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

performance

Status: Open.

#437 In sgkit-dev/sgkit;

· ravwojdyla opened on Jan 12, 2021

Possible race condition in _concat_zarrs_optimized

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

Status: Open.

#388 In sgkit-dev/sgkit;

· tomwhite opened on Nov 17, 2020

Track upstream improvements to concat and rechunk issue

IOIssues related to reading and writing common third-party file formatsIssues related to reading and writing common third-party file formats

upstreamUsed when our build breaks due to upstream changesUsed when our build breaks due to upstream changes

Status: Open.

#366 In sgkit-dev/sgkit;

· tomwhite opened on Nov 2, 2020