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- {ref}` sec-plink2zarr ` converts PLINK 1.0 data to
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[ VCF Zarr] ( https://github.com/sgkit-dev/vcf-zarr-spec/ ) format.
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+ - {ref}` sec-tskit2zarr ` converts [ tskit] ( https://tskit.dev )
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+ data into [ VCF Zarr] ( https://github.com/sgkit-dev/vcf-zarr-spec/ ) format.
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+
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- {ref}` sec-vcfpartition ` is a utility to split an input
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VCF into a given number of partitions. This is useful for
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parallel processing of VCF data.
@@ -25,13 +28,11 @@ support for other formats such as BGEN (or an interested in helping with impleme
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please open an [ issue on Github] ( https://github.com/sgkit-dev/bio2zarr/issues )
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to discuss!
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+ ## Python APIs
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- The package is currently focused on command line interfaces, but a
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- Python API is also planned.
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+ There is access to some limited functionality via Python APIs (documented
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+ along with the respective tools). These are in beta, and should be fully
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+ documented and stabilised in the coming releases. General APIs to enable
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+ efficient and straightforward encoding of data to VCZ are planned
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+ (see [ issue #412 ] ( https://github.com/sgkit-dev/bio2zarr/issues/412 ) ).
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- :::{warning}
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- Although it is possible to import the bio2zarr Python package
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- the APIs are purely internal for the moment and will change
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- in arbitrary ways. Please don't use them (or open issues about
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- them on GitHub).
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- :::
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