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add rnaseqc container and update rseqc #38

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Merged
merged 2 commits into from
Dec 13, 2023
Merged

add rnaseqc container and update rseqc #38

merged 2 commits into from
Dec 13, 2023

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cokelaer
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@cokelaer cokelaer commented Dec 13, 2023 •
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add rnaseqc container
fixing test and precommit
update rseqc

@cokelaer cokelaer requested review from khourhin and rania-o December 13, 2023 10:19
khourhin
khourhin reviewed Dec 13, 2023
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@cokelaer
Add rnaseqc container. cleanup rseqc section
f959c55 
also cleanup HTML report and added precommit
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coveralls commented Dec 13, 2023 •
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Pull Request Test Coverage Report for Build 7194192397

  • 13 of 18 (72.22%) changed or added relevant lines in 1 file are covered.
  • 113 unchanged lines in 4 files lost coverage.
  • Overall coverage increased (+0.7%) to 65.871%
Changes Missing Coverage Covered Lines Changed/Added Lines %
sequana_pipelines/rnaseq/main.py 13 18 72.22%
Files with Coverage Reduction New Missed Lines %
sequana_pipelines/rnaseq/main.py 2 79.87%
/home/runner/micromamba/envs/sequana_rnaseq/lib/python3.10/site-packages/sequana_pipelines/rnaseq/main.py 37 69.18%
/home/runner/micromamba/envs/sequana_rnaseq/lib/python3.8/site-packages/sequana_pipelines/rnaseq/main.py 37 69.18%
/home/runner/micromamba/envs/sequana_rnaseq/lib/python3.9/site-packages/sequana_pipelines/rnaseq/main.py 37 69.18%
Totals Coverage Status
Change from base Build 7101921810: 0.7%
Covered Lines: 469
Relevant Lines: 712
💛 - Coveralls

@cokelaer cokelaer merged commit 86976be into sequana:main Dec 13, 2023
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@khourhin khourhin khourhin left review comments

@rania-o rania-o rania-o approved these changes

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@cokelaer @coveralls @khourhin @rania-o