pipeline does not work if fastp rule is deactivate

[ddesvillechabrol]

#######################################################
# sofware__choice = ["atropos", "cutadapt", "fastp"]
trimming:
    software_choice: fastp
    do: false

MissingInputException in line 351 of /pasteur/zeus/projets/p02/Biomics/Bioinfo/InProgress/B6766/analysis/rnaseq/rnaseq.rules:
Missing input files for rule sample_rRNA:
D080322_N_CD4_TCR_100_S2/fastp/D080322_N_CD4_TCR_100_S2_R1_.fastp.fastq.gz

[cokelaer]

Indeed, syntax error and issues with other trimming tools such as cutadapt and atropos.
All fixed in future PR #31