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Merge branch 'master' of https://github.com/uci-cbcl/PyLOH
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yil8 committed Jun 8, 2015
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Expand Up @@ -127,7 +127,7 @@ Run model
---------
After the paired cancer sequencing data is preprocessed, we can run the probabilistic model of PyLOH by execute:
```
$ PyLOH.py run_model BASENAME --allele_number_max 2 --max_iters 100 --stop_value 1e-7
$ PyLOH.py run_model BASENAME --allelenumber_max 2 --max_iters 100 --stop_value 1e-7
```
**BASENAME** The base name of preprocessed files created in the preprocess step.

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