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add new icon design
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seanlaidlaw committed May 5, 2019
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[![Python 3.6](https://img.shields.io/badge/python-3.6-blue.svg)](https://www.python.org/downloads/release/python-360/)
[![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)

# Metallaxis


# Metallaxis
![MetallaxisLogo](../../Projet/Metallaxis/icons/Icon128.png)



Metallaxis is a Python graphical interface for viewing and annotating VCF
files. On loading a VCF file or compressed variant (vcf.gz,vcf.xz) it will generate statistics, graphs, and open a table view where the variants can be sorted, filtered, and their position visualised compared to the location of genes, based on data retrieved from API requests to ENSEMBL.
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- Savable analysis as a portable sqlite database

## Authors
Sean Laidlaw
Sean Laidlaw, with supervision from Anna-Sophie Fiston-Lavier, and with contributions from Qiqi He.

## Requirements:
Python:
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python3 -m metallaxis ../samples/1000_genomes_extract.vcf.gz
```

Or to load a previously saved Metallaxis session, by using the saved HDF5 as
argument:
Or to load a previously saved Metallaxis session, by using the saved database file as argument:
```bash
python3 -m metallaxis ../saves/big_saved_analysis.sqlite
```
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