Fix warning message + update lint versions

Makefile

@@ -97,7 +97,7 @@ lint-docs: ## check docs formatting with doc8 and pydocstyle
 fix-lint: ## fix lint issues using autoflake, autopep8, and isort
 	find copulas tests -name '*.py' | xargs autoflake --in-place --remove-all-unused-imports --remove-unused-variables
 	autopep8 --in-place --recursive --aggressive copulas tests
-	isort --apply --atomic --recursive copulas tests
+	isort --apply --atomic copulas tests
 
 
 # TEST TARGETS

RELEASE.md

@@ -73,7 +73,7 @@ And you will see something like this:
 ```
 ============================ 169 passed, 1 skipped, 3 warnings in 7.10s ============================
 flake8 copulas tests examples
-isort -c --recursive copulas tests examples
+isort -c copulas tests examples
 ```
 
 The execution has finished with no errors, 1 test skipped and 3 warnings.

copulas/__init__.py

@@ -321,7 +321,7 @@ def _find_addons():
         try:
             addon = entry_point.load()
         except Exception:  # pylint: disable=broad-exception-caught
-            msg = f'Failed to load "{entry_point.name}" from "{entry_point.module_name}".'
+            msg = f'Failed to load "{entry_point.name}" from "{entry_point.version}".'
             warnings.warn(msg)
             continue
 

pyproject.toml

@@ -90,32 +90,32 @@ dev = [
     "Jinja2>=2,<4;python_version>='3.12'",
 
     # style check
-    'flake8>=3.7.7,<4',
-    'isort>=4.3.4,<5',
-    'flake8-debugger>=4.0.0,<4.1',
-    'flake8-mock>=0.3,<0.4',
-    'flake8-mutable>=1.2.0,<1.3',
-    'flake8-fixme>=1.1.1,<1.2',
-    'pep8-naming>=0.12.1,<0.13',
-    'dlint>=0.11.0,<0.12',
+    'flake8>=3.7.7,<8',
+    'flake8-absolute-import>=1.0,<2',
+    'flake8-builtins>=1.5.3,<3',
+    'flake8-comprehensions>=3.6.1,<4',
+    'flake8-debugger>=4.0.0,<5',
     'flake8-docstrings>=1.5.0,<2',
-    'pydocstyle>=6.1.1,<6.2',
-    'flake8-pytest-style>=1.5.0,<2',
-    'flake8-comprehensions>=3.6.1,<3.7',
-    'flake8-print>=4.0.0,<4.1',
-    'flake8-expression-complexity>=0.0.9,<0.1',
+    'flake8-eradicate>=1.1.0,<2',
+    'flake8-fixme>=1.1.1,<1.2',
+    'flake8-mock>=0.3,<1',
     'flake8-multiline-containers>=0.0.18,<0.1',
-    'pandas-vet>=0.2.2,<0.3',
-    'flake8-builtins>=1.5.3,<1.6',
-    'flake8-eradicate>=1.1.0,<1.2',
+    'flake8-mutable>=1.2.0,<1.3',
+    'flake8-expression-complexity>=0.0.9,<0.1',
+    'flake8-print>=4.0.0,<4.1',
+    'flake8-pytest-style>=2.0.0,<3',
     'flake8-quotes>=3.3.0,<4',
+    'flake8-sfs>=0.0.3,<2',
     'flake8-variables-names>=0.0.4,<0.1',
-    'flake8-sfs>=0.0.3,<0.1',
-    'flake8-absolute-import>=1.0,<2',
+    'dlint>=0.11.0,<1',
+    'isort>=5.13.2,<6',
+    'pandas-vet>=0.2.3,<2024',
+    'pep8-naming>=0.12.1,<1',
+    'pydocstyle>=6.1.1,<7',
 
     # fix style issues
-    'autoflake>=1.1,<2',
-    'autopep8>=1.4.3,<1.6',
+    'autoflake>=1.1,<3',
+    'autopep8>=1.4.3,<3',
 
     # distribute on PyPI
     'twine>=1.10.0,<4',
@@ -141,7 +141,6 @@ line_length = 99
 lines_between_types = 0
 multi_line_output = 4
 use_parentheses = true
-not_skip = ['__init__.py']
 
 [tool.pydocstyle]
 convention = 'google'

setup.cfg

@@ -1,13 +1,23 @@
 [flake8]
 max-line-length = 99
 exclude = docs, .git, __pycache__, .ipynb_checkpoints
-extend-ignore = D107,  # Missing docstring in __init__
-	D413,  # Missing blank line after last section
-	DUO103, # insecure use of "pickle" or "cPickle"
-	N803,  # argument name 'X' should be lowercase
-	N806,  # variable 'X' in function should be lowercase
-	SFS3,  # String literal formatting using f-string.
-	VNE001  # Single letter variable names are not allowed
+extend-ignore =
+	# Missing docstring in __init__
+	D107,
+	# Missing blank line after last section
+	D413,
+	# insecure use of "pickle" or "cPickle"
+	DUO103
+	# argument name 'X' should be lowercase
+	N803,
+	# variable 'X' in function should be lowercase
+	N806,
+	# String literal formatting using f-string.
+	SFS3,
+	# Single letter variable names are not allowed
+	VNE001,
+	# TokenError: unterminated string literal
+	E902
 per-file-ignores = 
 	large_scale_evaluation.py:T001
 

tasks.py

@@ -146,7 +146,7 @@ def lint(c):
     c.run('pydocstyle copulas')
     c.run('flake8 tests --ignore=D,SFS2')
     c.run('pydocstyle tests')
-    c.run('isort -c --recursive copulas tests')
+    c.run('isort -c copulas tests')
 
 
 def remove_readonly(func, path, _):

tests/unit/multivariate/test_tree.py

@@ -263,7 +263,7 @@ def test_first_tree(self):
         """Assert 0 is the center node on the first tree."""
         assert self.tree.edges[0].L == 0
 
-    @pytest.mark.xfail()
+    @pytest.mark.xfail
     def test_first_tree_likelihood(self):
         """Assert first tree likehood is correct."""
         uni_matrix = np.array([[0.1, 0.2, 0.3, 0.4]])
@@ -288,7 +288,7 @@ def test_get_tau_matrix(self):
 
         assert not test.all()
 
-    @pytest.mark.xfail()
+    @pytest.mark.xfail
     def test_second_tree_likelihood(self):
         """Assert second tree likelihood is correct."""
         # Setup
@@ -350,7 +350,7 @@ def test_first_tree(self):
         assert sorted_edges[2].L == 2
         assert sorted_edges[2].R == 3
 
-    @pytest.mark.xfail()
+    @pytest.mark.xfail
     def test_first_tree_likelihood(self):
         """ Assert first tree likehood is correct"""
         uni_matrix = np.array([[0.1, 0.2, 0.3, 0.4]])
@@ -407,7 +407,7 @@ def test_first_tree(self):
         """ Assert 0 is the center node"""
         assert self.tree.edges[0].L == 0
 
-    @pytest.mark.xfail()
+    @pytest.mark.xfail
     def test_first_tree_likelihood(self):
         """ Assert first tree likehood is correct"""
         uni_matrix = np.array([[0.1, 0.2, 0.3, 0.4]])
@@ -444,7 +444,7 @@ def test_get_tau_matrix(self):
 
         assert bool(test.all()) is False
 
-    @pytest.mark.xfail()
+    @pytest.mark.xfail
     def test_second_tree_likelihood(self):
         """Assert second tree likelihood is correct."""
         tau = self.tree.get_tau_matrix()

tests/unit/test___init__.py

@@ -426,7 +426,7 @@ def test_get_instance_with_kwargs(self):
         assert instance.distribution == 'copulas.univariate.truncnorm.TruncNorm'
 
 
-@pytest.fixture()
+@pytest.fixture
 def mock_copulas():
     copulas_module = sys.modules['copulas']
     copulas_mock = MagicMock()
@@ -479,7 +479,7 @@ def entry_point_error():
 
     bad_entry_point = MagicMock()
     bad_entry_point.name = 'bad_entry_point'
-    bad_entry_point.module_name = 'bad_module'
+    bad_entry_point.version = 'bad_module'
     bad_entry_point.load.side_effect = entry_point_error
     entry_points_mock.return_value = [bad_entry_point]
     msg = 'Failed to load "bad_entry_point" from "bad_module".'