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totalvi update with explenations about pre filtering procedures #390

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Merged
merged 1 commit into from
Jan 15, 2025
Merged

totalvi update with explenations about pre filtering procedures #390

merged 1 commit into from
Jan 15, 2025

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ori-kron-wis
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Formatting

  • My tutorial has only one top-level (#) header

Reproducibility

  • My tutorial works on Google Colab
  • My tutorial sets scvi.settings.seed = 0 at the beginning of the notebook
  • My tutorial has been run and includes outputs (e.g. plots, tables)

Other

  • Counts and normalized data should co-exist in the datasets, see the API overview for an example
  • For scRNA-seq data, normalization should be counts per median library size and then log1p transformed -- if not, a reason should be given

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@ori-kron-wis ori-kron-wis merged commit af9ba31 into main Jan 15, 2025
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@ori-kron-wis ori-kron-wis deleted the Ori-totalvi-update branch January 15, 2025 13:15
@ori-kron-wis ori-kron-wis added this to the scvi-tutorials 1.2.0 milestone Jan 15, 2025
@ori-kron-wis ori-kron-wis self-assigned this Jan 15, 2025
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