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Merged
merged 4 commits into from
Sep 23, 2024
Merged

docs: updated several tutorials #346

merged 4 commits into from
Sep 23, 2024

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ori-kron-wis
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Formatting

  • My tutorial has only one top-level (#) header

Reproducibility

  • My tutorial works on Google Colab
  • My tutorial sets scvi.settings.seed = 0 at the beginning of the notebook
  • My tutorial has been run and includes outputs (e.g. plots, tables)

Other

  • Counts and normalized data should co-exist in the datasets, see the API overview for an example
  • For scRNA-seq data, normalization should be counts per median library size and then log1p transformed -- if not, a reason should be given

@ori-kron-wis ori-kron-wis added this to the scvi-tutorials 1.2.0 milestone Sep 23, 2024
@ori-kron-wis ori-kron-wis self-assigned this Sep 23, 2024
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ori-kron-wis and others added 2 commits September 23, 2024 17:58
@ori-kron-wis
Merge remote-tracking branch 'origin/main' into detached2
a784bbd 
# Conflicts:
#	.github/workflows/run_linux_cuda.yml
#	.github/workflows/run_notebook_individual.yaml
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[pre-commit.ci] auto fixes from pre-commit.com hooks
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@ori-kron-wis ori-kron-wis changed the title Detached2 docs: updated several tutorials Sep 23, 2024
canergen
canergen approved these changes Sep 23, 2024
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@ori-kron-wis ori-kron-wis merged commit e40dbe5 into main Sep 23, 2024
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@ori-kron-wis ori-kron-wis deleted the detached2 branch September 23, 2024 18:32
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@canergen canergen canergen approved these changes

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