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Pull requests: scverse/scanpy

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Pull requests list

Find gene symbols exist only in .raw attribute
#962 opened Dec 26, 2019 by mw201608 Loading…
2
Implement sc.get.summarized_expression_df
#1390 opened Aug 25, 2020 by gokceneraslan Loading…
9
Skip louvain-dependent tests
#1524 opened Dec 2, 2020 by flying-sheep Loading…
2
Cell selection based on simultaneous expression (co-expression)
#1657 opened Feb 17, 2021 by GMaciag Loading…
fix bug for partial_fit when the number of batch samples is less than n_comp
#3313 opened Oct 23, 2024 by DingWB Loading…
2 of 3 tasks
Formatting
#3414 opened Dec 20, 2024 by flying-sheep • Draft
3 tasks
1.11.0
Doc fixes for 1.11 Development Process 🚀
#3415 opened Dec 20, 2024 by flying-sheep • Draft 1.11.0
Take n_bins into account for the cell_ranger flavor of highly_variable_genes
#624 opened Apr 26, 2019 by e-sollier Loading…
1
Fix paga root
#910 opened Nov 8, 2019 by flying-sheep Loading…
1
2
Making var_group_rotation work when swap_axes is True Area - Plotting 🌺
#1763 opened Mar 25, 2021 by gokceneraslan Loading…
1
add n_top_genes argument to rank_genes_groups_df
#2145 opened Feb 18, 2022 by fbnrst Loading…
1
Make default for percent_top more permissive
#2346 opened Oct 7, 2022 by aeisenbarth Loading…
1
sc.tl.dendrogram 'var_names' -parameter bug fix
#2384 opened Dec 19, 2022 by lutrarutra Loading…
1
Nearest neighbours
#2426 opened Feb 21, 2023 by Sakshi-2797 Loading…
1
Parallel read
#2454 opened Mar 23, 2023 by Sakshi-2797 Loading…
1
Filter
#2455 opened Mar 24, 2023 by Sakshi-2797 • Draft
1
Regress out
#2456 opened Mar 24, 2023 by Sakshi-2797 • Draft
1
Fix rank_genes_groups_violin’s gene_symbols
#2554 opened Jul 11, 2023 by flying-sheep • Draft
1
1
n_components parameter for sc.tl.tsne
#2671 opened Sep 25, 2023 by TarikExner Loading…
1
obs. vs. obs for all grouped plots using BasePlot
#2769 opened Nov 28, 2023 by yugeji Loading…
1 of 6 tasks
1.12.0
@flying-sheep
2
tSNE components parameter
#2803 opened Jan 11, 2024 by ch1ru Loading…
2 of 3 tasks
1
1
Stacked barplot
#2873 opened Feb 20, 2024 by mbernste Loading…
1
Pearson Residuals: normalization and hvg
#2980 opened Apr 5, 2024 by eroell • Draft
2 of 3 tasks
1
13
Start overhaul for embedding sort order
#2998 opened Apr 10, 2024 by ivirshup • Draft
20 tasks
1.12.0
1
1
✨ Add colorblocks to baseplot similar to heatmap Area - Plotting 🌺
#3043 opened May 2, 2024 by mbuttner Loading…
2 tasks done
1
ProTip! What’s not been updated in a month: updated:<2024-11-28.