Skip to content

Reindexing only valid with uniquely valued Index objects #67

Open
@raozuming

Description

Describe the bug
mudata v.0.2.3 version, anndata v0.9.2, calling mudata.update(), causing anadata data update failure, confirming that there are no duplicate data in the original data, generating duplicate data in line 799 now_index = pd.Index(now_values), triggering line 801 index_order = prev_index.get_indexer(now_index), pandas.errors.InvalidIndexError: Reindexing only valid with uniquely valued Index objects

image

To Reproduce
Steps to reproduce the behaviour.

Please provide exact steps to reproduce the bug in a clean Python environment. In case it's not clear what's causing this bug, please provide the data or the data generation procedure.
Sometimes it is not possible to share the data but usually it is possible to replicate problems on publicly available datasets or to share a subset of your data.

Expected behaviour
A clear and concise description of what you expected to happen.

System

  • OS: centOS
  • Python version :3.8.12
  • Versions of libraries involved :Anndata: v0.9.2 mudata: v0.2.3 pandas: v1.5.3

Additional context
Add any other context about the problem here.

Metadata

Assignees

No one assigned

    Labels

    bugSomething isn't working

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions