Use hatch in github actions

.github/workflows/cruft-prs.yml

@@ -30,7 +30,7 @@ jobs:
           GITHUB_TOKEN: ${{ secrets.BOT_GH_TOKEN }}
           FORCE_COLOR: "1"
           COLUMNS: "150"
-      - uses: actions/upload-artifact@v3
+      - uses: actions/upload-artifact@v4
         with:
           name: cruft-logs
           path: log/

.github/workflows/deploy-instance-repo.yml

@@ -44,7 +44,7 @@ jobs:
 
       - name: Build from template
         run: |
-          uv tool run --with pre-commit cruft create \
+          uvx --with pre-commit cruft create \
             --no-input \
             --output-dir $INSTANCE_GENERATED \
             --extra-context-file .github/assets/cookiecutter-scverse-instance.json \

.github/workflows/propagate-pre-commit.yml

@@ -9,7 +9,7 @@ jobs:
   update:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           token: ${{ secrets.BOT_GH_TOKEN }}
       - run: pipx install pre-commit

.github/workflows/test.yaml

@@ -73,17 +73,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - name: Set up Python 3.11
-        uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
         with:
-          python-version: "3.11"
-          cache: "pip"
-          cache-dependency-path: "**/pyproject.toml"
-      - name: set python default branch
+          cache-dependency-glob: pyproject.toml
+      - name: set git default branch
         run: git config --global init.defaultBranch main
-      - name: Install build dependencies
-        run: python -m pip install --upgrade pip wheel
-      - name: Install package
-        run: pip install ./scripts[test]
       - name: Run tests
-        run: pytest -v --color=yes ./scripts
+        working-directory: ./scripts
+        run: uvx hatch test

README.md

@@ -61,7 +61,7 @@ To create the project, run the following command and follow the prompts:
 
 ```bash
 # uv will download all dependencies on-the-fly
-uv tool run --with pre-commit cruft create https://github.com/scverse/cookiecutter-scverse
+uvx --with pre-commit cruft create https://github.com/scverse/cookiecutter-scverse
 ```
 
 This will create a git repository generated from the template.

hooks/post_gen_project.py

@@ -22,8 +22,7 @@ def skipped_dirs():
     assert path.is_dir(), path
     shutil.rmtree(path)
 
-# Update pre commit hooks
-run("pre-commit autoupdate -c .pre-commit-config.yaml".split(), check=True)
+# Insatll pre-commit
 run("pre-commit install".split(), check=True)
 
 # The following output was generated using rich

{{cookiecutter.project_name}}/.github/workflows/build.yaml

@@ -10,20 +10,23 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
+defaults:
+  run:
+    shell: bash -e {0} # -e to fail on error
+
 jobs:
   package:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - name: Set up Python 3.12
-        uses: actions/setup-python@v5
         with:
-          python-version: "3.12"
-          cache: "pip"
-          cache-dependency-path: "**/pyproject.toml"
-      - name: Install build dependencies
-        run: python -m pip install --upgrade pip wheel twine build
+          filter: blob:none
+          fetch-depth: 0
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
+        with:
+          cache-dependency-glob: pyproject.toml
       - name: Build package
-        run: python -m build
+        run: uv build
       - name: Check package
-        run: twine check --strict dist/*.whl
+        run: uvx twine check --strict dist/*.whl

{{cookiecutter.project_name}}/.github/workflows/release.yaml

@@ -4,6 +4,10 @@ on:
   release:
     types: [published]
 
+defaults:
+  run:
+    shell: bash -e {0} # -e to fail on error
+
 # Use "trusted publishing", see https://docs.pypi.org/trusted-publishers/
 jobs:
   release:
@@ -19,11 +23,11 @@ jobs:
         with:
           filter: blob:none
           fetch-depth: 0
-      - uses: actions/setup-python@v5
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
         with:
-          python-version: "3.x"
-          cache: "pip"
-      - run: pip install build
-      - run: python -m build
+          cache-dependency-glob: pyproject.toml
+      - name: Build package
+        run: uv build
       - name: Publish package distributions to PyPI
         uses: pypa/gh-action-pypi-publish@release/v1

{{cookiecutter.project_name}}/.github/workflows/test.yaml

@@ -12,12 +12,13 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
 
+defaults:
+  run:
+    shell: bash -e {0} # -e to fail on error
+
 jobs:
   test:
     runs-on: ${{ matrix.os }}
-    defaults:
-      run:
-        shell: bash -e {0} # -e to fail on error
 
     strategy:
       fail-fast: false
@@ -40,28 +41,18 @@ jobs:
 
     steps:
       - uses: actions/checkout@v4
-      - name: Set up Python ${{ matrix.python }}
-        uses: actions/setup-python@v5
         with:
-          python-version: ${{ matrix.python }}
-          cache: "pip"
-          cache-dependency-path: "**/pyproject.toml"
-
-      - name: Install test dependencies
-        run: |
-          python -m pip install --upgrade pip wheel
-      - name: Install dependencies
-        run: |
-          pip install ${{ matrix.pip-flags }} ".[dev,test]"
-      - name: Test
+          filter: blob:none
+          fetch-depth: 0
+      - name: Install uv
+        uses: astral-sh/setup-uv@v5
+        with:
+          cache-dependency-glob: pyproject.toml
+      - name: run tests using hatch
         env:
           MPLBACKEND: agg
           PLATFORM: ${{ matrix.os }}
           DISPLAY: :42
-        run: |
-          coverage run -m pytest -v --color=yes
-      - name: Report coverage
-        run: |
-          coverage report
+        run: uvx hatch test --cover --python ${{ matrix.python }}
       - name: Upload coverage
-        uses: codecov/codecov-action@v3
+        uses: codecov/codecov-action@v4