A detailed software instructions setup can be found here. If you have any other questions, please direct them to the 2025-10: Workshop GSCN > tech-support Zulip channel.
Note: Schedule subject to minor adjustments.
13:00 – 13:15
🔹 Introduction
13:15 – 14:00
🧠 Common Lecture on:
- Basic pre-processing of single-cell RNA-seq data [F]
- Interpretive analysis using PyDESeq2 [F]
14:00 – 15:00
💻 Coding Practice & Troubleshooting Session
- Group A (Advanced) – Room: TBD
- Group B (Beginners) – Room: TBD
15:00 – 15:30
☕ Coffee Break
15:30 – 16:15
🧠 Common Lecture on:
- Batch correction [S]
- Trajectory analysis [S]
16:15 – 18:00
💻 Coding Practice & Troubleshooting Session
- Group A (Advanced) – Room: TBD
- Group B (Beginners) – Room: TBD
09:00 – 10:00
🧠 Common Lecture on:
- Ligand-receptor interactions [S]
- Differential cellular abundance [S]
10:00 – 10:30
☕ Coffee Break
10:30 – 12:00
💻 Coding Practice & Troubleshooting Session
- Group A (Advanced) – Room: TBD
- Group B (Beginners) – Room: TBD
12:00 – 13:00
🍽️ Lunch Break
13:00 – 14:00
🧠 Common Lecture on:
- Introduction to spatial transcriptomics [S]
- Spatial data [S]
14:00 – 15:00
💻 Coding Practice & Troubleshooting Session
- Group A (Advanced) – Room: TBD
- Group B (Beginners) – Room: TBD
15:00 – 15:30
☕ Coffee Break
15:30 – 16:30
🧠 Common Lecture on:
- Spatially aware clustering [F]
- Niche detection [F]
16:30 – 18:00
💻 Coding Practice & Troubleshooting Session
- Group A (Advanced) – Room: TBD
- Group B (Beginners) – Room: TBD