Adds bipartite graph function

CHANGELOG.md

@@ -7,6 +7,7 @@
 - Added Python definitions and wrappers for SCIPstartStrongbranch, SCIPendStrongbranch SCIPgetBranchScoreMultiple, 
   SCIPgetVarStrongbranchInt, SCIPupdateVarPseudocost, SCIPgetVarStrongbranchFrac, SCIPcolGetAge, 
   SCIPgetVarStrongbranchLast, SCIPgetVarStrongbranchNode, SCIPallColsInLP, SCIPcolGetAge
+- Added getBipartiteGraphRepresentation
 ### Fixed
 - Fixed too strict getObjVal, getVal check
 ### Changed

src/pyscipopt/scip.pxi

@@ -262,7 +262,7 @@
     if rc == SCIP_OKAY:
         pass
     elif rc == SCIP_ERROR:
         raise Exception('SCIP: unspecified error!')
     elif rc == SCIP_NOMEMORY:
         raise MemoryError('SCIP: insufficient memory error!')
     elif rc == SCIP_READERROR:
@@ -2066,8 +2066,9 @@
         return SCIPgetRowObjParallelism(self._scip, row.scip_row)
 
     def getRowParallelism(self, Row row1, Row row2, orthofunc=101):
-        """Returns the degree of parallelism between hyplerplanes. 1 if perfectly parallel, 0 if orthognal.
-        101 in this case is an 'e' (euclidean) in ASCII. The other accpetable input is 100 (d for discrete)."""
+        """Returns the degree of parallelism between hyplerplanes. 1 if perfectly parallel, 0 if orthogonal.
+        For two row vectors v, w the parallelism is calculated as: |v*w|/(|v|*|w|).
+        101 in this case is an 'e' (euclidean) in ASCII. The other acceptable input is 100 (d for discrete)."""
         return SCIProwGetParallelism(row1.scip_row, row2.scip_row, orthofunc)
 
     def getRowDualSol(self, Row row):
@@ -5697,6 +5698,255 @@
         """Get an estimation of the final tree size """
         return SCIPgetTreesizeEstimation(self._scip)
 
+
+    def getBipartiteGraphRepresentation(self, prev_col_features=None, prev_edge_features=None, prev_row_features=None,
+                                        static_only=False, suppress_warnings=False):
+        """This function generates the bipartite graph representation of an LP, which was first used in
+        the following paper:
+        @inproceedings{conf/nips/GasseCFCL19,
+        title={Exact Combinatorial Optimization with Graph Convolutional Neural Networks},
+        author={Gasse, Maxime and Chételat, Didier and Ferroni, Nicola and Charlin, Laurent and Lodi, Andrea},
+        booktitle={Advances in Neural Information Processing Systems 32},
+        year={2019}
+        }
+        The exact features have been modified compared to the original implementation.
+        This function is used mainly in the machine learning community for MIP.
+        A user can only call it during the solving process, when there is an LP object. This means calling it
+        from some user defined plugin on the Python side.
+        An example plugin is a branching rule or an event handler, which is exclusively created to call this function.
+        The user must then make certain to return the appropriate SCIP_RESULT (e.g. DIDNOTRUN)
+
+        :param prev_col_features: The list of column features previously returned by this function
+        :param prev_edge_features: The list of edge features previously returned by this function
+        :param prev_row_features: The list of row features previously returned by this function
+        :param static_only: Whether exclusively static features should be generated
+        :param suppress_warnings: Whether warnings should be suppressed
+        """
+
+        cdef SCIP* scip = self._scip
+        cdef int i, j, k, col_i
+        cdef SCIP_VARTYPE vtype
+        cdef SCIP_Real sim, prod
+
+        # Check if SCIP is in the correct stage
+        if SCIPgetStage(scip) != SCIP_STAGE_SOLVING:
+            raise Warning("This functionality can only been called in SCIP_STAGE SOLVING. The row and column"
+                          "information is then accessible")
+
+        # Generate column features
+        cdef SCIP_COL** cols = SCIPgetLPCols(scip)
+        cdef int ncols = SCIPgetNLPCols(scip)
+
+        if static_only:
+            n_col_features = 5
+            col_feature_map = {"continuous": 0, "binary": 1, "integer": 2, "implicit_integer": 3, "obj_coef": 4}
+        else:
+            n_col_features = 19
+            col_feature_map = {"continuous": 0, "binary": 1, "integer": 2, "implicit_integer": 3, "obj_coef": 4,
+                               "has_lb": 5, "has_ub": 6, "sol_at_lb": 7, "sol_at_ub": 8, "sol_val": 9, "sol_frac": 10,
+                               "red_cost": 11, "basis_lower": 12, "basis_basic": 13, "basis_upper": 14,
+                               "basis_zero": 15, "best_incumbent_val": 16, "avg_incumbent_val": 17, "age": 18}
+
+        if prev_col_features is None:
+            col_features = [[0 for _ in range(n_col_features)] for _ in range(ncols)]
+        else:
+            assert len(prev_col_features) > 0, "Previous column features is empty"
+            col_features = prev_col_features
+            if len(prev_col_features) != ncols:
+                if not suppress_warnings:
+                    raise Warning(f"The number of columns has changed. Previous column data being ignored")
+                else:
+                    col_features = [[0 for _ in range(n_col_features)] for _ in range(ncols)]
+                    prev_col_features = None
+            if len(prev_col_features[0]) != n_col_features:
+                raise Warning(f"Dimension mismatch in provided previous features and new features:"
+                              f"{len(prev_col_features[0])} != {n_col_features}")
+
+        cdef SCIP_SOL* sol = SCIPgetBestSol(scip)
+        cdef SCIP_VAR* var
+        cdef SCIP_Real lb, ub, solval
+        cdef SCIP_BASESTAT basis_status
+        for i in range(ncols):
+            col_i = SCIPcolGetLPPos(cols[i])
+            var = SCIPcolGetVar(cols[i])
+
+            lb = SCIPcolGetLb(cols[i])
+            ub = SCIPcolGetUb(cols[i])
+            solval = SCIPcolGetPrimsol(cols[i])
+
+            # Collect the static features first (don't need to changed if previous features are passed)
+            if prev_col_features is None:
+                # Variable types
+                vtype = SCIPvarGetType(var)
+                if vtype == SCIP_VARTYPE_BINARY:
+                    col_features[col_i][col_feature_map["binary"]] = 1
+                elif vtype == SCIP_VARTYPE_INTEGER:
+                    col_features[col_i][col_feature_map["integer"]] = 1
+                elif vtype == SCIP_VARTYPE_CONTINUOUS:
+                    col_features[col_i][col_feature_map["continuous"]] = 1
+                elif vtype == SCIP_VARTYPE_IMPLINT:
+                    col_features[col_i][col_feature_map["implicit_integer"]] = 1
+                # Objective coefficient
+                col_features[col_i][col_feature_map["obj_coef"]] = SCIPcolGetObj(cols[i])
+
+            # Collect the dynamic features
+            if not static_only:
+                # Lower bound
+                if not SCIPisInfinity(scip, abs(lb)):
+                    col_features[col_i][col_feature_map["has_lb"]] = 1
+
+                # Upper bound
+                if not SCIPisInfinity(scip, abs(ub)):
+                    col_features[col_i][col_feature_map["has_ub"]] = 1
+
+                # Basis status
+                basis_status = SCIPcolGetBasisStatus(cols[i])
+                if basis_status == SCIP_BASESTAT_LOWER:
+                    col_features[col_i][col_feature_map["basis_lower"]] = 1
+                elif basis_status == SCIP_BASESTAT_BASIC:
+                    col_features[col_i][col_feature_map["basis_basic"]] = 1
+                elif basis_status == SCIP_BASESTAT_UPPER:
+                    col_features[col_i][col_feature_map["basis_upper"]] = 1
+                elif basis_status == SCIP_BASESTAT_ZERO:
+                    col_features[col_i][col_feature_map["basis_zero"]] = 1
+
+                # Reduced cost
+                col_features[col_i][col_feature_map["red_cost"]] = SCIPgetColRedcost(scip, cols[i])
+
+                # Age
+                col_features[col_i][col_feature_map["age"]] = SCIPcolGetAge(cols[i])
+
+                # LP solution value
+                col_features[col_i][col_feature_map["sol_val"]] = solval
+                col_features[col_i][col_feature_map["sol_frac"]] = SCIPfeasFrac(scip, solval)
+                col_features[col_i][col_feature_map["sol_at_lb"]] = int(SCIPisEQ(scip, solval, lb))
+                col_features[col_i][col_feature_map["sol_at_ub"]] = int(SCIPisEQ(scip, solval, ub))
+
+                # Incumbent solution value
+                if sol is NULL:
+                    col_features[col_i][col_feature_map["best_incumbent_val"]] = None
+                    col_features[col_i][col_feature_map["avg_incumbent_val"]] = None
+                else:
+                    col_features[col_i][col_feature_map["best_incumbent_val"]] = SCIPgetSolVal(scip, sol, var)
+                    col_features[col_i][col_feature_map["avg_incumbent_val"]] = SCIPvarGetAvgSol(var)
+
+        # Generate row features
+        cdef int nrows = SCIPgetNLPRows(scip)
+        cdef SCIP_ROW** rows = SCIPgetLPRows(scip)
+
+        if static_only:
+            n_row_features = 6
+            row_feature_map = {"has_lhs": 0, "has_rhs": 1, "n_non_zeros": 2, "obj_cosine": 3, "bias": 4, "norm": 5}
+        else:
+            n_row_features = 14
+            row_feature_map = {"has_lhs": 0, "has_rhs": 1, "n_non_zeros": 2, "obj_cosine": 3, "bias": 4, "norm": 5,
+                               "sol_at_lhs": 6, "sol_at_rhs": 7, "dual_sol": 8, "age": 9,
+                               "basis_lower": 10, "basis_basic": 11, "basis_upper": 12, "basis_zero": 13}
+
+        if prev_row_features is None:
+            row_features = [[0 for _ in range(n_row_features)] for _ in range(nrows)]
+        else:
+            assert len(prev_row_features) > 0, "Previous row features is empty"
+            row_features = prev_row_features
+            if len(prev_row_features) != nrows:
+                if not suppress_warnings:
+                    raise Warning(f"The number of rows has changed. Previous row data being ignored")
+                else:
+                    row_features = [[0 for _ in range(n_row_features)] for _ in range(nrows)]
+                    prev_row_features = None
+            if len(prev_row_features[0]) != n_row_features:
+                raise Warning(f"Dimension mismatch in provided previous features and new features:"
+                              f"{len(prev_row_features[0])} != {n_row_features}")
+
+        cdef int nnzrs = 0
+        cdef SCIP_Real lhs, rhs, cst
+        for i in range(nrows):
+
+            # lhs <= activity + cst <= rhs
+            lhs = SCIProwGetLhs(rows[i])
+            rhs = SCIProwGetRhs(rows[i])
+            cst = SCIProwGetConstant(rows[i])
+            activity = SCIPgetRowLPActivity(scip, rows[i])
+
+            if prev_row_features is None:
+                # number of coefficients
+                row_features[i][row_feature_map["n_non_zeros"]] = SCIProwGetNLPNonz(rows[i])
+                nnzrs += row_features[i][row_feature_map["n_non_zeros"]]
+
+                # left-hand-side
+                if not SCIPisInfinity(scip, abs(lhs)):
+                    row_features[i][row_feature_map["has_lhs"]] = 1
+
+                # right-hand-side
+                if not SCIPisInfinity(scip, abs(rhs)):
+                    row_features[i][row_feature_map["has_rhs"]] = 1
+
+                # bias
+                row_features[i][row_feature_map["bias"]] = cst
+
+                # Objective cosine similarity
+                row_features[i][row_feature_map["obj_cosine"]] = SCIPgetRowObjParallelism(scip, rows[i])
+
+                # L2 norm
+                row_features[i][row_feature_map["norm"]] = SCIProwGetNorm(rows[i])
+
+            if not static_only:
+
+                # Dual solution
+                row_features[i][row_feature_map["dual_sol"]] = SCIProwGetDualsol(rows[i])
+
+                # Basis status
+                basis_status = SCIProwGetBasisStatus(rows[i])
+                if basis_status == SCIP_BASESTAT_LOWER:
+                    row_features[i][row_feature_map["basis_lower"]] = 1
+                elif basis_status == SCIP_BASESTAT_BASIC:
+                    row_features[i][row_feature_map["basis_basic"]] = 1
+                elif basis_status == SCIP_BASESTAT_UPPER:
+                    row_features[i][row_feature_map["basis_upper"]] = 1
+                elif basis_status == SCIP_BASESTAT_ZERO:
+                    row_features[i][row_feature_map["basis_zero"]] = 1
+
+                # Age
+                row_features[i][row_feature_map["age"]] = SCIProwGetAge(rows[i])
+
+                # Is tight
+                row_features[i][row_feature_map["sol_at_lhs"]] = int(SCIPisEQ(scip, activity, lhs))
+                row_features[i][row_feature_map["sol_at_rhs"]] = int(SCIPisEQ(scip, activity, rhs))
+
+        # Generate edge (coefficient) features
+        cdef SCIP_COL** row_cols
+        cdef SCIP_Real * row_vals
+        n_edge_features = 3
+        edge_feature_map = {"col_idx": 0, "row_idx": 1, "coef": 2}
+        if prev_edge_features is None:
+            edge_features = [[0 for _ in range(n_edge_features)] for _ in range(nnzrs)]
+            j = 0
+            for i in range(nrows):
+                # coefficient indexes and values
+                row_cols = SCIProwGetCols(rows[i])
+                row_vals = SCIProwGetVals(rows[i])
+                for k in range(row_features[i][row_feature_map["n_non_zeros"]]):
+                    edge_features[j][edge_feature_map["col_idx"]] = SCIPcolGetLPPos(row_cols[k])
+                    edge_features[j][edge_feature_map["row_idx"]] = i
+                    edge_features[j][edge_feature_map["coef"]] = row_vals[k]
+                    j += 1
+        else:
+            assert len(prev_edge_features) > 0, "Previous edge features is empty"
+            edge_features = prev_edge_features
+            if len(prev_edge_features) != nnzrs:
+                if not suppress_warnings:
+                    raise Warning(f"The number of coefficients in the LP has changed. Previous edge data being ignored")
+                else:
+                    edge_features = [[0 for _ in range(3)] for _ in range(nnzrs)]
+                    prev_edge_features = None
+            if len(prev_edge_features[0]) != 3:
+                raise Warning(f"Dimension mismatch in provided previous features and new features:"
+                              f"{len(prev_edge_features[0])} != 3")
+
+
+        return (col_features, edge_features, row_features,
+                {"col": col_feature_map, "edge": edge_feature_map, "row": row_feature_map})
+
 @dataclass
 class Statistics:
     """

tests/test_bipartite.py

@@ -0,0 +1,118 @@
+from pyscipopt import Model, Branchrule, SCIP_RESULT, quicksum, SCIP_PARAMSETTING
+
+"""
+This is a test for the bipartite graph generation functionality.
+To make the test more practical, we embed the function in a dummy branching rule. Such functionality would allow
+users to then extract the feature set before any branching decision. This can be used to gather data for training etc 
+and to to deploy actual branching rules trained on data from the graph representation.
+"""
+
+
+class DummyFeatureExtractingBranchRule(Branchrule):
+
+    def __init__(self, scip, static=False, use_prev_states=True):
+        self.scip = scip
+        self.static = static
+        self.use_prev_states = use_prev_states
+        self.prev_col_features = None
+        self.prev_row_features = None
+        self.prev_edge_features = None
+
+    def branchexeclp(self, allowaddcons):
+
+        # Get the bipartite graph data
+        if self.use_prev_states:
+            prev_col_features = self.prev_col_features
+            prev_edge_features = self.prev_edge_features
+            prev_row_features = self.prev_row_features
+        else:
+            prev_col_features = None
+            prev_edge_features = None
+            prev_row_features = None
+        col_features, edge_features, row_features, feature_maps = self.scip.getBipartiteGraphRepresentation(
+            prev_col_features=prev_col_features, prev_edge_features=prev_edge_features,
+            prev_row_features=prev_row_features, static_only=self.static
+        )
+
+        # Here is now where a decision could be based off the features. If no decision is made just return DIDNOTRUN
+
+        return {"result": SCIP_RESULT.DIDNOTRUN}
+
+
+
+
+
+def create_model():
+    scip = Model()
+    scip.setHeuristics(SCIP_PARAMSETTING.OFF)
+    scip.setSeparating(SCIP_PARAMSETTING.OFF)
+    scip.setLongintParam("limits/nodes", 250)
+    scip.setParam("presolving/maxrestarts", 0)
+
+    x0 = scip.addVar(lb=-2, ub=4)
+    r1 = scip.addVar()
+    r2 = scip.addVar()
+    y0 = scip.addVar(lb=3)
+    t = scip.addVar(lb=None)
+    l = scip.addVar(vtype="I", lb=-9, ub=18)
+    u = scip.addVar(vtype="I", lb=-3, ub=99)
+
+    more_vars = []
+    for i in range(100):
+        more_vars.append(scip.addVar(vtype="I", lb=-12, ub=40))
+        scip.addCons(quicksum(v for v in more_vars) <= (40 - i) * quicksum(v for v in more_vars[::2]))
+
+    for i in range(100):
+        more_vars.append(scip.addVar(vtype="I", lb=-52, ub=10))
+        scip.addCons(quicksum(v for v in more_vars[50::2]) <= (40 - i) * quicksum(v for v in more_vars[200::2]))
+
+    scip.addCons(r1 >= x0)
+    scip.addCons(r2 >= -x0)
+    scip.addCons(y0 == r1 + r2)
+    scip.addCons(t + l + 7 * u <= 300)
+    scip.addCons(t >= quicksum(v for v in more_vars[::3]) - 10 * more_vars[5] + 5 * more_vars[9])
+    scip.addCons(more_vars[3] >= l + 2)
+    scip.addCons(7 <= quicksum(v for v in more_vars[::4]) - x0)
+    scip.addCons(quicksum(v for v in more_vars[::2]) + l <= quicksum(v for v in more_vars[::4]))
+
+    scip.setObjective(t - quicksum(j * v for j, v in enumerate(more_vars[20:-40])))
+
+    return scip
+
+
+def test_bipartite_graph():
+    scip = create_model()
+
+    dummy_branch_rule = DummyFeatureExtractingBranchRule(scip)
+    scip.includeBranchrule(dummy_branch_rule, "dummy branch rule", "custom feature extraction branching rule",
+                           priority=10000000, maxdepth=-1, maxbounddist=1)
+
+    scip.optimize()
+
+
+def test_bipartite_graph_static():
+    scip = create_model()
+
+    dummy_branch_rule = DummyFeatureExtractingBranchRule(scip, static=True)
+    scip.includeBranchrule(dummy_branch_rule, "dummy branch rule", "custom feature extraction branching rule",
+                           priority=10000000, maxdepth=-1, maxbounddist=1)
+
+    scip.optimize()
+
+def test_bipartite_graph_use_prev():
+    scip = create_model()
+
+    dummy_branch_rule = DummyFeatureExtractingBranchRule(scip, use_prev_states=True)
+    scip.includeBranchrule(dummy_branch_rule, "dummy branch rule", "custom feature extraction branching rule",
+                           priority=10000000, maxdepth=-1, maxbounddist=1)
+
+    scip.optimize()
+
+def test_bipartite_graph_static_use_prev():
+    scip = create_model()
+
+    dummy_branch_rule = DummyFeatureExtractingBranchRule(scip, static=True, use_prev_states=True)
+    scip.includeBranchrule(dummy_branch_rule, "dummy branch rule", "custom feature extraction branching rule",
+                           priority=10000000, maxdepth=-1, maxbounddist=1)
+
+    scip.optimize()