Convert to src style package from flat

scikit-tda · catanzaromj · Jul 12, 2024 · Jul 12, 2024 · Jul 12, 2024 · Jul 12, 2024
commit 503ea22522a5863fcf70efaa468468d81aed1e67
diff --git a/MANIFEST.in b/MANIFEST.in
@@ -1,5 +1,5 @@
 include *.txt
 include *.md
-include ripser/pyRips.pxd
-include ripser/ripser.cpp
-include ripser/pyRipser.pyx
+include src/ripser/pyRips.pxd
+include src/ripser/ripser.cpp
+include src/ripser/pyRipser.pyx
diff --git a/pyproject.toml b/pyproject.toml
@@ -47,9 +47,6 @@ docs = ["sktda_docs_config"]
 
 examples = ["tadasets", "jupyter", "pillow"]
 
-[tool.setuptools.packages.find]
-where = ["ripser"]
-
 [project.urls]
 Homepage = "https://ripser.scikit-tda.org"
 Documentation = "https://ripser.scikit-tda.org"

diff --git a/setup.py b/setup.py
@@ -16,7 +16,7 @@
 
 
 def get_version():
-    VERSIONFILE = "ripser/_version.py"
+    VERSIONFILE = "src/ripser/_version.py"
     verstrline = open(VERSIONFILE, "rt").read()
     VSRE = r"^__version__ = ['\"]([^'\"]*)['\"]"
     mo = re.search(VSRE, verstrline, re.M)
@@ -81,7 +81,7 @@ def run(self):
 
 ext_modules = Extension(
     "pyRipser",
-    sources=["ripser/pyRipser.pyx"],
+    sources=["src/ripser/pyRipser.pyx"],
     define_macros=macros,
     extra_compile_args=extra_compile_args,
     extra_link_args=extra_link_args,

diff --git a/ripser/__init__.py → src/ripser/__init__.py b/ripser/__init__.py → src/ripser/__init__.py
diff --git a/ripser/_version.py → src/ripser/_version.py b/ripser/_version.py → src/ripser/_version.py
diff --git a/ripser/pyRips.pxd → src/ripser/pyRips.pxd b/ripser/pyRips.pxd → src/ripser/pyRips.pxd
diff --git a/ripser/pyRipser.pyx → src/ripser/pyRipser.pyx b/ripser/pyRipser.pyx → src/ripser/pyRipser.pyx
diff --git a/ripser/ripser.cpp → src/ripser/ripser.cpp b/ripser/ripser.cpp → src/ripser/ripser.cpp
diff --git a/ripser/ripser.h → src/ripser/ripser.h b/ripser/ripser.h → src/ripser/ripser.h
diff --git a/ripser/ripser.py → src/ripser/ripser.py b/ripser/ripser.py → src/ripser/ripser.py