Catch exception while copyinng #84
Workflow file for this run
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| name: build | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "*-[0-9]+.*" | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| test-pip: | |
| name: ${{ matrix.platform }} py${{ matrix.python-version }} | |
| runs-on: ${{ matrix.platform }} | |
| strategy: | |
| matrix: | |
| platform: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ['3.8', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install jgo | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install -e '.[dev]' | |
| - name: Test jgo | |
| run: | | |
| python -m pytest -s -p no:faulthandler --color=yes | |
| ensure-clean-code: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v3 | |
| - name: Lint code | |
| uses: psf/black@stable | |
| - name: Flake code | |
| run: | | |
| python -m pip install flake8 | |
| python -m flake8 src tests | |
| - name: Check import ordering | |
| uses: isort/isort-action@master | |
| with: | |
| configuration: --check-only | |
| - name: Validate pyproject.toml | |
| run: | | |
| python -m pip install validate-pyproject[all] | |
| python -m validate_pyproject pyproject.toml | |
| conda-dev-test: | |
| name: Conda Setup & Code Coverage | |
| runs-on: ubuntu-latest | |
| defaults: | |
| # Steps that rely on the activated environment must be run with this shell setup. | |
| # See https://github.com/marketplace/actions/setup-miniconda#important | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache conda | |
| uses: actions/cache@v2 | |
| env: | |
| # Increase this value to reset cache if dev-environment.yml has not changed | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: | |
| ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('dev-environment.yml') }} | |
| - uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| # Create env with dev packages | |
| auto-update-conda: true | |
| python-version: 3.9 | |
| miniforge-variant: Mambaforge | |
| environment-file: dev-environment.yml | |
| # Activate jgo-dev environment | |
| activate-environment: jgo-dev | |
| auto-activate-base: false | |
| # Use mamba for faster setup | |
| use-mamba: true | |
| # TODO: Determine why python -m pytest fails | |
| - name: Test napari-imagej | |
| run: | | |
| conda run -n jgo-dev --no-capture-output pytest -s -p no:faulthandler --color=yes --cov-report=xml --cov=. | |
| # We could do this in its own action, but we'd have to setup the environment again. | |
| - name: Upload Coverage to Codecov | |
| uses: codecov/codecov-action@v2 |