- BTreeMap based approach to implement a overlap graph and then it computes the graph lookup table and search for the offset in the reads where those prefix and suffix are not present.
- Build a BTreeMap, for the overlap graph,
- Make a unique kmer has offset table.
- search for the offset of the matched suffixes.
- please see the last commit message and if it says compiled binary then it is completed or else still in development version.
cargo build
➜ gauravsablok rust-overlap-graph git:(master) ✗ ./target/debug/rust-overlapgraph -h
Usage: rust-overlapgraph <OVERLAP_FILE> <OVERLAP_SIZE>
Arguments:
<OVERLAP_FILE> please provide the path to the fastq file
<OVERLAP_SIZE> please provide the overlap length
Options:
-h, --help Print help
-V, --version Print version
Gaurav Sablok