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Issues list

Error in SCTransform: Missing cell.attr Argument When Regressing mitoRatio bug Something isn't working
#9461 opened Nov 7, 2024 by EsToHi
SpatialPlot not working as its supposed to bug Something isn't working
#9455 opened Nov 6, 2024 by Aditya-Gautam20
4
Why do FindMarkers DE p-values vary significantly between V4 and V5? bug Something isn't working
#9443 opened Oct 31, 2024 by mauritsunkel
DimPlot convenience functions infer arguments from the call stack bug Something isn't working
#9436 opened Oct 28, 2024 by rharao
v5 FindAllMarkers avg_log2FC values diverge from Wilcoxon results bug Something isn't working
#9426 opened Oct 25, 2024 by michael-r-odea
WhichCell() for marker names with dashes from ADT assay returned error of None of the requested variables were found, even when using backticks bug Something isn't working
#9411 opened Oct 20, 2024 by denvercal1234GitHub
1
What is the expected directory structure for Load10X_Spatial? Having issues importing Visium HD Data. bug Something isn't working
#9410 opened Oct 18, 2024 by kokodur
1
CCAIntegration Approach in IntegrateLayers does not use InterableMatrix from BPCells bug Something isn't working
#9408 opened Oct 17, 2024 by Victor21v
Scaling on Variable Features only and all Features yields different UMAP projections on subsampled or split data bug Something isn't working
#9401 opened Oct 15, 2024 by JurMich
bug about the definetion of RowVarSparse in RunPCA bug Something isn't working
#9396 opened Oct 12, 2024 by NormalLomo
Error in IntegrateLayers after subsetting Seurat object bug Something isn't working
#9381 opened Oct 9, 2024 by Katrine-klat
2
Help with subset seurat object by a column in metadata bug Something isn't working
#9368 opened Oct 6, 2024 by Chrisdoan9
4
FindConservedMarkers function seems to ignore the "slot" argument bug Something isn't working
#9365 opened Oct 5, 2024 by jasonleongbio
3
PercentageFeatureSet not working with BPCells matrix bug Something isn't working
#9363 opened Oct 4, 2024 by oliviaellis65
1
Tutorial for Bridge Integration is missing reference files bug Something isn't working
#9362 opened Oct 4, 2024 by ekiernan
Problem using Crop: Crop Coordinates bug Something isn't working
#9360 opened Oct 4, 2024 by carlacohen
2
Rotate images for spatial analysis (previous workaround no longer runs) bug Something isn't working
#9344 opened Sep 27, 2024 by jgaunt264
1
AverageExpression with Seurat v5 Layers bug Something isn't working
#9340 opened Sep 27, 2024 by ondina-draia
1
ProjectData problem: loss cluster in full data bug Something isn't working
#9336 opened Sep 26, 2024 by lilwo
2
missing value where TRUE/FALSE needed in IntegrateLayers() bug Something isn't working
#9330 opened Sep 23, 2024 by katkatrach
1
Crop function not working bug Something isn't working
#9325 opened Sep 20, 2024 by elifozcelik
4
ImageDimPlot seems confusing and unfriendly to programmers bug Something isn't working
#9309 opened Sep 13, 2024 by Puriney
2
Error (vector::reserve) with SCTransform on Large Seurat v5 Object bug Something isn't working
#9304 opened Sep 11, 2024 by mztalay
Read10X_Image Not Loading CSV File bug Something isn't working
#9297 opened Sep 9, 2024 by Ezoorp
scTransform Causes Substantial Y Chromosome Gene Abundances in Women Samples bug Something isn't working
#9277 opened Sep 2, 2024 by DarioS
ProTip! What’s not been updated in a month: updated:<2024-10-07.