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BUG: <insert-descriptive-title>Erreur dans methods::slot(object = object, name = "layers")[[layer]][features, : nombre de dimensions incorrect

bugSomething isn't workingSomething isn't working

Status: Open.

#10081 In satijalab/seurat;

· Labyadh opened on Sep 9, 2025

IntegrateLayers or IntegrateData for scTransformed objects

Status: Open.

#10080 In satijalab/seurat;

· rbonifer opened on Sep 8, 2025

BUG: seurat@meta.data loses rownames

bugSomething isn't workingSomething isn't working

Status: Open.

#10072 In satijalab/seurat;

· epartan opened on Sep 5, 2025

The minimum number cells in each group to do DEG analysis by Findermarkers()

Status: Open.

#10068 In satijalab/seurat;

· Xiangyi-Deng opened on Sep 3, 2025

BUG: <FindMultiModalNeighbors: Error: std::bad_alloc>

bugSomething isn't workingSomething isn't working

Status: Open.

#10067 In satijalab/seurat;

· Thapeachydude opened on Sep 3, 2025

BUG: DimPlot fetch the wrong reduction if the object's meta.data contains the same name as the reduction

bugSomething isn't workingSomething isn't working

Status: Open.

#10061 In satijalab/seurat;

· HoangEevee opened on Aug 29, 2025

[Visium HD 3' beta support] Interactive Spatial Plots broken with segmented_outputs

Status: Open.

#10052 In satijalab/seurat;

· YoukaiFromAccounting opened on Aug 22, 2025

What is the correct approach for integrating multiple Seurat objects in v5? Unsure if there is a better way to create a single seurat object unless I merge all objects and I then integrate.

Status: Open.

#10049 In satijalab/seurat;

· SynapticPup opened on Aug 21, 2025

IntegrateData returns Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 't': subscript out of bounds

Status: Open.

#10034 In satijalab/seurat;

· mikemartinez99 opened on Aug 5, 2025

BUG: Cell order in sparse count matrix affects ScaleData() results and downstream PCA/UMAP

bugSomething isn't workingSomething isn't working

Status: Open.

#10033 In satijalab/seurat;

· JLiLab opened on Aug 4, 2025

Proposal: Add <code>RunscDblFinder()</code> and <code>RunDoubletFinder()</code> with unified <code>RunDoubletDetection()</code> wrapper

Status: Open.

#10022 In satijalab/seurat;

· BenjaminDEMAILLE opened on Jul 28, 2025

Issue: Major speed-up in FindIntegrationAnchors (CCA) between Seurat versions — unexpected 25x gain

Status: Open.

#10020 In satijalab/seurat;

· BenjaminDEMAILLE opened on Jul 27, 2025