added lines for TrackMate data conversion

saskiakutz · Nov 26, 2021 · e66e519 · e66e519
1 parent 5ace14e
commit e66e519
Showing 1 changed file with 5 additions and 0 deletions.
diff --git a/pythonr/run_hdf5.R b/pythonr/run_hdf5.R
@@ -72,6 +72,11 @@ run_fun <- function(
       pts <- datah5$data[, c(datacol[1], datacol[2])]
       sds <- datah5$data[, datacol[3]]
 
+      if (micro_meter == TRUE){
+        pts <- pts/1000
+        sds <- sds/1000
+      }
+
       xlim <- c(min(pts[, 1]), max(pts[, 1]))
       ylim <- c(min(pts[, 2]), max(pts[, 2]))