rename to stratage

.coveragerc

@@ -1,7 +1,7 @@
 # .coveragerc to control coverage.py
 [run]
 branch = True
-source = stratagemc
+source = stratage
 # omit = bad_file.py
 
 [paths]

CONTRIBUTING.rst

@@ -27,7 +27,7 @@
 Contributing
 ============
 
-Welcome to ``stratagemc`` contributor's guide.
+Welcome to ``stratage`` contributor's guide.
 
 This document focuses on getting any potential contributor familiarized
 with the development processes, but `other kinds of contributions`_ are also
@@ -46,7 +46,7 @@ guidelines.
 Issue Reports
 =============
 
-If you experience bugs or general issues with ``stratagemc``, please have a look
+If you experience bugs or general issues with ``stratage``, please have a look
 on the `issue tracker`_. If you don't see anything useful there, please feel
 free to fire an issue report.
 
@@ -65,10 +65,10 @@ you help us to identify the root cause of the issue.
 Documentation Improvements
 ==========================
 
-You can help improve ``stratagemc`` docs by making them more readable and coherent, or
+You can help improve ``stratage`` docs by making them more readable and coherent, or
 by adding missing information and correcting mistakes.
 
-``stratagemc`` documentation uses Sphinx_ as its main documentation compiler.
+``stratage`` documentation uses Sphinx_ as its main documentation compiler.
 This means that the docs are kept in the same repository as the project code, and
 that any documentation update is done in the same way was a code contribution.
 
@@ -80,7 +80,7 @@ that any documentation update is done in the same way was a code contribution.
 
    .. tip::
       Please notice that the `GitHub web interface`_ provides a quick way of
-      propose changes in ``stratagemc``'s files. While this mechanism can
+      propose changes in ``stratage``'s files. While this mechanism can
       be tricky for normal code contributions, it works perfectly fine for
       contributing to the docs, and can be quite handy.
 
@@ -131,8 +131,8 @@ This can easily be done via either |virtualenv|_::
 
 or Miniconda_::
 
-    conda create -n stratagemc python=3 six virtualenv pytest pytest-cov
-    conda activate stratagemc
+    conda create -n stratage python=3 six virtualenv pytest pytest-cov
+    conda activate stratage
 
 Clone the repository
 --------------------
@@ -142,8 +142,8 @@ Clone the repository
    page. This creates a copy of the code under your account on |the repository service|.
 #. Clone this copy to your local disk::
 
-    git clone git@github.com:YourLogin/stratagemc.git
-    cd stratagemc
+    git clone git@github.com:YourLogin/stratage.git
+    cd stratage
 
 #. You should run::
 
@@ -158,7 +158,7 @@ Clone the repository
     pip install pre-commit
     pre-commit install
 
-   ``stratagemc`` comes with a lot of hooks configured to automatically help the
+   ``stratage`` comes with a lot of hooks configured to automatically help the
    developer to check the code being written.
 
 Implement your changes
@@ -285,7 +285,7 @@ Releases
 
 If you are part of the group of maintainers and have correct user permissions
 on PyPI_, the following steps can be used to release a new version for
-``stratagemc``:
+``stratage``:
 
 #. Make sure all unit tests are successful.
 #. Tag the current commit on the main branch with a release tag, e.g., ``v1.2.3``.
@@ -314,8 +314,8 @@ on PyPI_, the following steps can be used to release a new version for
 .. |the repository service| replace:: GitHub
 .. |contribute button| replace:: "Create pull request"
 
-.. _repository: https://github.com/<USERNAME>/stratagemc
-.. _issue tracker: https://github.com/<USERNAME>/stratagemc/issues
+.. _repository: https://github.com/<USERNAME>/stratage
+.. _issue tracker: https://github.com/<USERNAME>/stratage/issues
 .. <-- end -->
 
 

README.rst

@@ -1,27 +1,27 @@
 .. These are examples of badges you might want to add to your README:
    please update the URLs accordingly
 
-    .. image:: https://api.cirrus-ci.com/github/<USER>/stratagemc.svg?branch=main
+    .. image:: https://api.cirrus-ci.com/github/<USER>/stratage.svg?branch=main
         :alt: Built Status
-        :target: https://cirrus-ci.com/github/<USER>/stratagemc
-    .. image:: https://readthedocs.org/projects/stratagemc/badge/?version=latest
+        :target: https://cirrus-ci.com/github/<USER>/stratage
+    .. image:: https://readthedocs.org/projects/stratage/badge/?version=latest
         :alt: ReadTheDocs
-        :target: https://stratagemc.readthedocs.io/en/stable/
-    .. image:: https://img.shields.io/coveralls/github/<USER>/stratagemc/main.svg
+        :target: https://stratage.readthedocs.io/en/stable/
+    .. image:: https://img.shields.io/coveralls/github/<USER>/stratage/main.svg
         :alt: Coveralls
-        :target: https://coveralls.io/r/<USER>/stratagemc
-    .. image:: https://img.shields.io/pypi/v/stratagemc.svg
+        :target: https://coveralls.io/r/<USER>/stratage
+    .. image:: https://img.shields.io/pypi/v/stratage.svg
         :alt: PyPI-Server
-        :target: https://pypi.org/project/stratagemc/
-    .. image:: https://img.shields.io/conda/vn/conda-forge/stratagemc.svg
+        :target: https://pypi.org/project/stratage/
+    .. image:: https://img.shields.io/conda/vn/conda-forge/stratage.svg
         :alt: Conda-Forge
-        :target: https://anaconda.org/conda-forge/stratagemc
-    .. image:: https://pepy.tech/badge/stratagemc/month
+        :target: https://anaconda.org/conda-forge/stratage
+    .. image:: https://pepy.tech/badge/stratage/month
         :alt: Monthly Downloads
-        :target: https://pepy.tech/project/stratagemc
+        :target: https://pepy.tech/project/stratage
     .. image:: https://img.shields.io/twitter/url/http/shields.io.svg?style=social&label=Twitter
         :alt: Twitter
-        :target: https://twitter.com/stratagemc
+        :target: https://twitter.com/stratage
 
 .. image:: https://img.shields.io/badge/-PyScaffold-005CA0?logo=pyscaffold
     :alt: Project generated with PyScaffold
@@ -30,7 +30,7 @@
 |
 
 ==========
-stratagemc
+stratage
 ==========
 
 

docs/conf.py

@@ -28,31 +28,31 @@
 # setup.py install" in the RTD Advanced Settings.
 # Additionally it helps us to avoid running apidoc manually
 
-# try:  # for Sphinx >= 1.7
-#     from sphinx.ext import apidoc
-# except ImportError:
-#     from sphinx import apidoc
+try:  # for Sphinx >= 1.7
+    from sphinx.ext import apidoc
+except ImportError:
+    from sphinx import apidoc
 
-# output_dir = os.path.join(__location__, "api")
-# module_dir = os.path.join(__location__, "../src/stratagemc")
-# try:
-#     shutil.rmtree(output_dir)
-# except FileNotFoundError:
-#     pass
+output_dir = os.path.join(__location__, "api")
+module_dir = os.path.join(__location__, "../src/stratage")
+try:
+    shutil.rmtree(output_dir)
+except FileNotFoundError:
+    pass
 
-# try:
-#     import sphinx
+try:
+    import sphinx
 
-#     cmd_line = f"sphinx-apidoc --implicit-namespaces -f -o {output_dir} {module_dir}"
+    cmd_line = f"sphinx-apidoc --implicit-namespaces -f -o {output_dir} {module_dir}"
 
-#     args = cmd_line.split(" ")
-#     if tuple(sphinx.__version__.split(".")) >= ("1", "7"):
-#         # This is a rudimentary parse_version to avoid external dependencies
-#         args = args[1:]
+    args = cmd_line.split(" ")
+    if tuple(sphinx.__version__.split(".")) >= ("1", "7"):
+        # This is a rudimentary parse_version to avoid external dependencies
+        args = args[1:]
 
-#     apidoc.main(args)
-# except Exception as e:
-#     print("Running `sphinx-apidoc` failed!\n{}".format(e))
+    apidoc.main(args)
+except Exception as e:
+    print("Running `sphinx-apidoc` failed!\n{}".format(e))
 
 # -- General configuration ---------------------------------------------------
 
@@ -89,7 +89,7 @@
 master_doc = "index"
 
 # General information about the project.
-project = "stratagemc"
+project = "stratage"
 copyright = "2024, Adrian Tasistro-Hart"
 
 # The version info for the project you're documenting, acts as replacement for
@@ -101,7 +101,7 @@
 # If you don’t need the separation provided between version and release,
 # just set them both to the same value.
 try:
-    from stratagemc import __version__ as version
+    from stratage import __version__ as version
 except ImportError:
     version = ""
 
@@ -231,7 +231,7 @@
 # html_file_suffix = None
 
 # Output file base name for HTML help builder.
-htmlhelp_basename = "stratagemc-doc"
+htmlhelp_basename = "stratage-doc"
 
 
 # -- Options for LaTeX output ------------------------------------------------
@@ -248,7 +248,7 @@
 # Grouping the document tree into LaTeX files. List of tuples
 # (source start file, target name, title, author, documentclass [howto/manual]).
 latex_documents = [
-    ("index", "user_guide.tex", "stratagemc Documentation", "Adrian Tasistro-Hart", "manual")
+    ("index", "user_guide.tex", "stratage Documentation", "Adrian Tasistro-Hart", "manual")
 ]
 
 # The name of an image file (relative to this directory) to place at the top of

docs/index.rst

@@ -1,8 +1,8 @@
-==========
-stratagemc
-==========
+========
+StratAge
+========
 
-This is the documentation of **stratagemc**.
+This is the documentation of **stratage**.
 
 .. note::
 

docs/modules.rst

@@ -1,7 +1,7 @@
-stratagemc
-==========
+stratage
+========
 
 .. toctree::
    :maxdepth: 4
 
-   stratagemc
+   stratage

docs/stratagemc.rst → docs/stratage.rst

@@ -1,10 +1,10 @@
-stratagemc package
-==================
+stratage package
+================
 
 Module contents
 ---------------
 
-.. automodule:: stratagemc
+.. automodule:: stratage
    :imported-members:
    :members:
    :undoc-members:
@@ -14,10 +14,10 @@ Module contents
 Submodules
 ----------
 
-stratagemc.geochron module
---------------------------
+stratage.geochron module
+------------------------
 
-.. automodule:: stratagemc.geochron
+.. automodule:: stratage.geochron
    :members:
    :undoc-members:
    :show-inheritance:

setup.cfg

@@ -4,20 +4,20 @@
 # https://setuptools.pypa.io/en/latest/references/keywords.html
 
 [metadata]
-name = StratAgeMC
+name = StratAge
 description = Bayesian age modeling of stratigraphy.
 author = Adrian Tasistro-Hart
 author_email = adrian@tasistro-hart.com
 license = GPL-3.0-only
 license_files = LICENSE.txt
 long_description = file: README.rst
 long_description_content_type = text/x-rst; charset=UTF-8
-url = https://github.com/sarttiso/stratagemc
+url = https://github.com/sarttiso/stratage
 # Add here related links, for example:
 project_urls =
     Documentation = https://pyscaffold.org/
-    Source = https://github.com/sarttiso/stratagemc
-    Changelog = https://adrian.tasistro-hart.com/stratagemc/changelog.html
+    Source = https://github.com/sarttiso/stratage
+    Changelog = https://adrian.tasistro-hart.com/stratage/changelog.html
 #    Tracker = https://github.com/pyscaffold/pyscaffold/issues
 #    Conda-Forge = https://anaconda.org/conda-forge/pyscaffold
 #    Download = https://pypi.org/project/PyScaffold/#files
@@ -63,7 +63,7 @@ exclude =
 
 [options.extras_require]
 # Add here additional requirements for extra features, to install with:
-# `pip install stratagemc[PDF]` like:
+# `pip install stratage[PDF]` like:
 # PDF = ReportLab; RXP
 
 # Add here test requirements (semicolon/line-separated)
@@ -75,10 +75,10 @@ testing =
 [options.entry_points]
 # Add here console scripts like:
 # console_scripts =
-#     script_name = stratagemc.module:function
+#     script_name = stratage.module:function
 # For example:
 # console_scripts =
-#     fibonacci = stratagemc.skeleton:run
+#     fibonacci = stratage.skeleton:run
 # And any other entry points, for example:
 # pyscaffold.cli =
 #     awesome = pyscaffoldext.awesome.extension:AwesomeExtension
@@ -90,7 +90,7 @@ testing =
 # CAUTION: --cov flags may prohibit setting breakpoints while debugging.
 #          Comment those flags to avoid this pytest issue.
 addopts =
-    --cov stratagemc --cov-report term-missing
+    --cov stratage --cov-report term-missing
     --verbose
 norecursedirs =
     dist
@@ -125,4 +125,4 @@ exclude =
 # PyScaffold's parameters when the project was created.
 # This will be used when updating. Do not change!
 version = 4.5
-package = stratagemc
+package = stratage

setup.py

@@ -1,5 +1,5 @@
 """
-    Setup file for stratagemc.
+    Setup file for stratage.
     Use setup.cfg to configure your project.
 
     This file was generated with PyScaffold 4.5.

src/stratagemc/__init__.py

@@ -15,7 +15,7 @@
 finally:
     del version, PackageNotFoundError
 
-from .stratagemc import *
+from .stratage import *
 
 __all__ = ['geochron_height_check',
            'trim_units',