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Los Angeles, CA
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Los Angeles, CA
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sanmatidugad/README.md

I am a Research Associate and a Bioinformatician

Professional Expertise:

  • MRI Data Analysis - Fetal and Infant Data Processing (Automating and Containerizing Pipelines)
  • Automatation of Bioinformatics Pipelines (Nextflow, SnakeMake, Miniwdl, Parallel Processing - AWS)
  • Next Generation Sequencing Data Analysis (DNA-Seq, bulk RNA-Seq, single-cell RNA-Seq, ATAC-Seq, CITE-Seq and eQTL Mapping)
  • Statistical Analysis
  • Machine Learning
  • Protein Bioinformatics (Molecular Dynamic Simulations, Molecular Docking, Network Analysis, Homology Modeling)
  • Target Identification and Drug Discovery

GitHub Views

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  1. GTEx-Nextflow-RNASeq-Pipeline GTEx-Nextflow-RNASeq-Pipeline Public

    This repository contains a Nextflow RNA-Seq analysis pipeline tailored for GTEx data analysis. The pipeline aligns RNA-Seq reads using STAR, marks duplicates, quantifies with RSEM, and performs QC …

    Nextflow 1

  2. Clinical-Data-Analysis-Whole-Genome-Sequencing Clinical-Data-Analysis-Whole-Genome-Sequencing Public

    This repository analyzes cancer genomic data obtained from tumor/normal whole exome sequencing of 50 patients who received the same type of treatment. Half of these patients responded to the treatm…

    Jupyter Notebook 1

  3. single-cell-RNA-Seq-Analysis single-cell-RNA-Seq-Analysis Public

    This repository serves as my personal space for learning and practicing single-cell RNA sequencing (scRNA-seq) analysis. Inspired by various scientific research articles, I aim to reproduce and imp…

    R 1

  4. SQL SQL Public

    Solutions to SQL problems from HackerRank and Leetcode. Each solution is provided as a SQL script file (.sql) named according to the corresponding problem's title

    1

  5. RShiny RShiny Public

    Explore my curated collection of R Shiny applications designed for small yet impactful data analyses. Whether you're working with genomic data, performing statistical comparisons, or conducting exp…

    R 1

  6. double-decompress-dicom double-decompress-dicom Public

    A GDCM-based pipeline that performs double decompression of MRI DICOM files to ensure reliable downstream conversion to NIfTI (.nii.gz).

    Python