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add input type fastq.gz and fq.gz for Illumina and HiC reads #96

Merged
merged 8 commits into from
Jul 22, 2024
Merged

add input type fastq.gz and fq.gz for Illumina and HiC reads #96

merged 8 commits into from
Jul 22, 2024

Commits on Jul 9, 2024

  1. add input type fastq.gz and fg.gz for Illumina reads

    @reichan1998
    reichan1998 committed Jul 9, 2024
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  2. prettier linting

    @reichan1998
    reichan1998 committed Jul 9, 2024
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  3. prettier formating

    @reichan1998
    reichan1998 committed Jul 9, 2024
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  4. update usage.md

    @reichan1998
    reichan1998 committed Jul 9, 2024
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  5. prettier linting

    @reichan1998
    reichan1998 committed Jul 9, 2024
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  6. move the branching for FASTQ files inside of align_short.nf

    @reichan1998
    reichan1998 committed Jul 9, 2024
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  7. edit align_short.nf

    @reichan1998
    reichan1998 committed Jul 9, 2024
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Commits on Jul 22, 2024

  1. add a FASTQ sample into samplesheet_s3.csv for test profile

    @reichan1998
    reichan1998 committed Jul 22, 2024
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