Pathogen Informatics, Wellcome Sanger Institute
- 160 followers
- Hinxton, Cambs., UK
- http://www.sanger.ac.uk/science/groups/pathogen-informatics
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Repositories
Showing 10 of 117 repositories
- assorted-sub-workflows Public
- dlh-in-a-box-umbrella-helm-chart Public
An Open Source Data Lakehouse Umbrella Helm Chart, dependent on trino, prefect, minio, hive and datahub
- trepogeno Public
trepogeno is a molecular typing scheme and tool for classifying Treponema pallidum genomic data
- nextflowtool Public
- rvi-vl-kraken-prep Public
- Multiple-mappings-to-bam Public
A GSoC project - Nextflow pipeline updating the legacy Python2 Multiple mappings to bam to nextflow.
- mapping-helminth Public
A pipeline for mapping helminth genomes minimap2 as a mapper and GATK/Samtools/Sambamba for further processing.
- lung-microbiome-visium Public
Tool to design probes under various constraints (primarily for use with 10X Genomics Visium Spatial Gene Expression).
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