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Mountain Lion using Intel
Glen Hansen edited this page Nov 8, 2014
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10 revisions
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Version 1.2.8
CC=icc CXX=icpc CFLAGS=-O3 CXXFLAGS=-O3 ./configure --archs="-arch x86_64" --prefix=/usr/local/intel make -j 4 make install
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Version 1.8.11
./configure CC=mpicc FC=mpif90 CXX=mpicxx CXXFLAGS="-fPIC -O3" CFLAGS="-fPIC -O3" FCFLAGS="-fPIC -O3" --enable-parallel --with-zlib=/usr/local/intel --prefix=/usr/local/intel/parallel make -j 4 make install
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Version 4.3.0
./configure --prefix=/usr/local/intel/parallel CC=mpicc FC=mpif90 CXX=mpicxx CFLAGS="-I/usr/local/intel/parallel/include -O3" LDFLAGS=-L/usr/local/intel/parallel/lib --disable-fsync --disable-cdmremote --disable-dap --disable-shared --disable-doxygen make -j 4 make install
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Version 1.55.0
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Build boost with the commands
echo "using mpi : /opt/intel/bin/mpicxx ;" >> ./tools/build/v2/user-config.jam echo "using intel-darwin : /opt/intel/bin/icpc ;" >> ./tools/build/v2/user-config.jam ./bootstrap.sh --with-toolset=intel-darwin --with-libraries=signals,regex,filesystem,system,mpi,serialization,thread,program_options,exception --prefix=/usr/local/intel ./b2 -j 4 ./b2 -j 4 install -
The above bjam command gave me an error, so I removed the following lines from project-config.jam:
if ! intel-darwin in [ feature.values <toolset> ] { using intel-darwin ; }
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Version 4.0.3
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Edit metis.h to use an IDXTYPEWIDTH of 64
cd parmetis-4.0.3/metis/include vi metis.h #define IDXTYPEWIDTH 64 -
Run CMake to build metis
cd /usr/local/src/parmetis-4.0.3/metis mkdir build cd build export metis=/usr/local/src/parmetis-4.0.3/metis cmake \ -DCMAKE_INSTALL_PREFIX=/usr/local/intel/parmetis-4.0.3 \ -DMETIS_PATH=$metis \ -DGKLIB_PATH=$metis/GKlib \ -DCMAKE_C_COMPILER=mpicc \ -DCMAKE_CXX_COMPILER=mpicxx \ .. make -j 4 make install -
Run CMake to build parmetis
cd /usr/local/src/parmetis-4.0.3 mkdir builddir cd builddir export metis=/usr/local/src/parmetis-4.0.3/metis/ cmake \ -DCMAKE_INSTALL_PREFIX=/usr/local/intel/parmetis-4.0.3 \ -DMETIS_PATH=$metis \ -DGKLIB_PATH=$metis/GKlib \ -DCMAKE_C_COMPILER=mpicc \ -DCMAKE_CXX_COMPILER=mpicxx \ .. make -j 4 make install
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Version 4.3
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Build paths
mkdir /usr/local/intel/SuperLU_4.3 mkdir /usr/local/intel/SuperLU_4.3/include mkdir /usr/local/intel/SuperLU_4.3/lib -
Edit make.inc for your machine and environment
PLAT = _lion SuperLUroot = /usr/local/intel/SuperLU_4.3 SUPERLULIB = $(SuperLUroot)/lib/libsuperlu_4.3.a TMGLIB = libtmglib.a BLASDEF = -DUSE_VENDOR_BLAS BLASLIB = -L/opt/intel/mkl/lib -lmkl_intel_lp64 -lmkl_sequential -lmkl_core LIBS = $(SUPERLULIB) $(BLASLIB) ARCH = ar ARCHFLAGS = cr RANLIB = ranlib CC = icc CFLAGS = -ftz -O3 NOOPTS = FORTRAN = ifort FFLAGS = -ftz -O3 LOADER = $(CC) LOADOPTS = CDEFS = -DAdd_ MATLAB = /usr/sww/matlab -
Build SuperLU
make -j 4 cd SRC cp *.h /usr/local/intel/SuperLU_4.3/include
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HWLOC is an optional package that can be used for thread pinning by Kokkos. If you are not building Kokkos, or if you don't care about thread pinning, please skip.
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Version 1.8
./configure CC=mpicc CXX=mpicxx --prefix=/usr/local/intel make -j 4 make install
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There appears to be an issue with std::complex not being found in the resolution of #include. I added the path to a known definition:
export CPLUS_INCLUDE_PATH=/usr/include/c++/4.2.1 -
do-configure script
#!/bin/sh # export TRILINOS_HOME=/Users/gahanse/Codes/Trilinos BUILD_DIR=`pwd` INSTALL_DIR=/usr/local/trilinos/MPI_INTEL BOOST_DIR=/usr/local/intel HWLOC_PATH=/usr/local/intel MPI_BASE_DIR=/opt/intel NETCDF=/usr/local/intel/parallel HDFDIR=/usr/local/intel/parallel ZDIR=/usr/local/intel PARMETISDIR=/usr/local/intel/parmetis-4.0.3 SUPERLUDIR=/usr/local/intel/SuperLU_4.3 MKL_PATH=/opt/intel LABLAS_LIBRARY_DIRS="$MKL_PATH/mkl/lib" LABLAS_LIBRARY_NAMES="mkl_intel_lp64;mkl_sequential;mkl_core;pthread" export BOOST_ROOT=$BOOST_DIR EXTRA_ARGS=$@ cmake \ -D Trilinos_CONFIGURE_OPTIONS_FILE:FILEPATH=$TRILINOS_HOME/sampleScripts/AlbanySettings.cmake \ -D Trilinos_EXTRA_REPOSITORIES:STRING=SCOREC \ -D Trilinos_ENABLE_SCOREC:BOOL=ON \ -D SCOREC_DISABLE_STRONG_WARNINGS:BOOL=ON \ -D CMAKE_BUILD_TYPE:STRING=RELEASE \ -D CMAKE_C_FLAGS:STRING="-wd161 -wd47" \ -D CMAKE_CXX_FLAGS:STRING="-wd161 -wd47" \ -D CMAKE_AR:STRING="xiar" \ -D CMAKE_LINKER:STRING="xild" \ \ -D TPL_ENABLE_MPI:BOOL=ON \ -D MPI_BASE_DIR:PATH=$MPI_BASE_DIR \ \ -D TPL_ENABLE_Pthread:BOOL=ON \ \ -D Boost_INCLUDE_DIRS:PATH=$BOOST_DIR/include \ -D BoostLib_INCLUDE_DIRS:PATH=$BOOST_DIR/include \ -D BoostAlbLib_INCLUDE_DIRS:PATH=$BOOST_DIR/include \ -D Boost_LIBRARY_DIRS:PATH=$BOOST_DIR/lib \ -D BoostLib_LIBRARY_DIRS:PATH=$BOOST_DIR/lib \ -D BoostAlbLib_LIBRARY_DIRS:PATH=$BOOST_DIR/lib \ \ -D TPL_ENABLE_Netcdf:STRING=ON \ -D Netcdf_INCLUDE_DIRS:PATH="${NETCDF}/include" \ -D Netcdf_LIBRARY_DIRS:PATH="${NETCDF}/lib" \ \ -D TPL_ENABLE_HDF5:STRING=ON \ -D HDF5_INCLUDE_DIRS:PATH="${HDFDIR}/include" \ -D TPL_HDF5_LIBRARIES:PATH="${HDFDIR}/lib/libhdf5_hl.a;${HDFDIR}/lib/libhdf5.a;${ZDIR}/lib/libz.a" \ \ -D TPL_ENABLE_Zlib:STRING=ON \ -D Zlib_INCLUDE_DIRS:PATH="${ZDIR}/include" \ -D TPL_Zlib_LIBRARIES:PATH="${ZDIR}/lib/libz.a" \ \ -D TPL_ENABLE_ParMETIS:STRING=ON \ -D ParMETIS_INCLUDE_DIRS:PATH="${PARMETISDIR}/include" \ -D ParMETIS_LIBRARY_DIRS:PATH="${PARMETISDIR}/lib" \ \ -D TPL_ENABLE_SuperLU:STRING=ON \ -D SuperLU_INCLUDE_DIRS:STRING="${SUPERLUDIR}/include" \ -D SuperLU_LIBRARY_DIRS:STRING="${SUPERLUDIR}/lib" \ \ -D TPL_ENABLE_BLAS:STRING=ON \ -D TPL_ENABLE_LAPACK:STRING=ON \ -D BLAS_LIBRARY_DIRS:STRING=$LABLAS_LIBRARY_DIRS \ -D BLAS_LIBRARY_NAMES:STRING=$LABLAS_LIBRARY_NAMES \ -D LAPACK_LIBRARY_DIRS:STRING=$LABLAS_LIBRARY_DIRS \ -D LAPACK_LIBRARY_NAMES:STRING=$LABLAS_LIBRARY_NAMES \ \ -D CMAKE_INSTALL_PREFIX:PATH=${INSTALL_DIR} \ \ $EXTRA_ARGS \ ${TRILINOS_HOME} -
In the above, two warnings are disabled, "-wd161 -wd47". These ignore clang pragma warnings.
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The paths to the mkl and MPI libraries are added to the path:
export DYLD_LIBRARY_PATH=/opt/intel/mkl/lib:/opt/intel/lib
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CMake configure script:
#!/bin/sh export ALB_ENABLE_SCOREC=ON export ALB_ENABLE_LCM=ON export ALB_ENABLE_LAME=ON export ALB_ENABLE_HYDRIDE=ON export ALB_ENABLE_QCAD=ON export ALB_ENABLE_MOR=ON export ALB_ENABLE_ASCR=ON export ALB_ENABLE_AERAS=ON export ALB_ENABLE_FELIX=ON export ALB_ENABLE_AlbanyCI=OFF export ALB_DEBUG=OFF export ALB_ENABLE_CHECK_FPE=OFF export ALB_ENABLE_SPECULATIVE=OFF export ALB_ENABLE_SG_MP=ON export ALB_ENABLE_PERF_TESTS=ON export TRILINOS_INSTALL_DIR=/usr/local/trilinos/MPI_INTEL export ALB_VERBOSE=OFF cmake \ -D ALBANY_TRILINOS_DIR:FILEPATH="$TRILINOS_INSTALL_DIR" \ -D ENABLE_LCM:BOOL=${ALB_ENABLE_LCM} \ -D ENABLE_AERAS:BOOL=${ALB_ENABLE_AERAS} \ -D ENABLE_QCAD:BOOL=${ALB_ENABLE_QCAD} \ -D ENABLE_HYDRIDE:BOOL=${ALB_ENABLE_HYDRIDE} \ -D ENABLE_LCM_SPECULATIVE:BOOL=${ALB_ENABLE_SPECULATIVE} \ -D ENABLE_LAME:BOOL=${ALB_ENABLE_LAME} \ -D CMAKE_VERBOSE_MAKEFILE:BOOL=${ALB_VERBOSE} \ -D ENABLE_DEBUGGING:BOOL=${ALB_DEBUG} \ -D ENABLE_CHECK_FPE:BOOL=${ALB_ENABLE_CHECK_FPE} \ -D ENABLE_SCOREC:BOOL=${ALB_ENABLE_SCOREC} \ -D ENABLE_FELIX:BOOL=${ALB_ENABLE_FELIX} \ -D ENABLE_MOR:BOOL=${ALB_ENABLE_MOR} \ -D ENABLE_ALBANY_CI:BOOL=${ALB_ENABLE_AlbanyCI} \ -D ENABLE_ASCR:BOOL=${ALB_ENABLE_ASCR} \ -D ENABLE_SG_MP:BOOL=${ALB_ENABLE_SG_MP} \ -D ENABLE_PERFORMANCE_TESTS:BOOL=${ALB_ENABLE_PERF_TESTS} \ -D ALBANY_CTEST_TIMEOUT:INTEGER=70 \ \ ..