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Autumn news 2026 - #2101
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Autumn news 2026#2101whitwham wants to merge 4 commits into
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As usual this will be updated until the next release. |
Signed-off-by: Andrew Whitwham <aw7@sanger.ac.uk>
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| * Update build badge, remove .cirrus.yml, spelling corrections. | ||
| (PR #2071. Thanks to John Marshall) | ||
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| * Improved code testing with the addition of a fuzzer for the expression |
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We might want to mention that this fixes several expression parsing bugs, including a possible NULL pointer write, a divide-by-zero bug and some memory leaks.
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Added a bit more detail.
| * Fix multiple VCF header parsing bugs. | ||
| (PR #2074, fixes #2065 Reported by Mark Woon) | ||
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| * Resolve cigar2 overflow. |
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Suggested change
| * Resolve cigar2 overflow. | |
| * Prevent integer overflow in resolve_cigar2() |
| * CG tag and SEQ/CIGAR consistency. | ||
| (PR # 2089. Fixes oss-fuzz issue 560967311) | ||
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| * Simplify crai reading and zlib_mem_inflate(). |
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Suggested change
| * Simplify crai reading and zlib_mem_inflate(). | |
| * Stop the CRAM zlib decoder from getting stuck in an endless loop. |
| * Resolve cigar2 overflow. | ||
| (PR #2072) | ||
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| * CG tag and SEQ/CIGAR consistency. |
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Suggested change
| * CG tag and SEQ/CIGAR consistency. | |
| * Improve checking of SEQ/CIGAR consistency when processing records with CG tags. |
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| * Fix hts_set_filter_expression(fp, NULL) that did not previously reset the | ||
| pointer to NULL. |
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Suggested change
| * Fix hts_set_filter_expression(fp, NULL) that did not previously reset the | |
| pointer to NULL. | |
| * Fix hts_set_filter_expression(fp, NULL) so that it properly disables | |
| filtering without leaving a dangling pointer behind. |
Signed-off-by: Andrew Whitwham <aw7@sanger.ac.uk>
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News for the next release.