updates to polysomy command for publication #286
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- rewritten for greater experimental flexibility - the AA peak can be included in the fit (the -i option) - the minimum fraction of aberrant cells as a command line parameter (-m) - control the minimum cn4 bump size (-b)
…lute; hidden --force-cn option for debugging
This was hidden as it was/is experimental, but with the licensing additions, users are explicitly requesting the command by compiling with USE_GPL=1, so we might as well display in the help message. Closes #280
mcshane
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Jul 6, 2015
updates to polysomy command for publication
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-ioption)-m)-b)Resolves #280