Hello,
I would like to take a VCF and write a TSV with one line per genotype, using something like:
bcftools query -f '[%ID\t%SAMPLE\t%GT\n]' $REF_VCF
The VCF in question has a META field also named ID. Is there a way to explicitly reference the built-in ID field? While I can more explicitly reference info fields like %INFO/AF, this does not appear to work for built-in fields like ID. Is there a workaround? Thanks for any help.