Skip to content

bcftools norm Segmentation fault (core dumped) #2020

@Rohit-Satyam

Description

@Rohit-Satyam

Hi @pd3
I was trying to split the multiallelic variants using bcftools norm but I keep on getting an error. I got the VCF from here and subset it for region Pf3D7_03_v3:365177-366948 to test it on a small dataset.

bcftools norm --multiallelics -any --old-rec-tag OLD_CLUMPED --atomize -o bcftools.normalized.gatk.vcf Pf3D7_03_v3.pf7.vcf.gz
Segmentation fault (core dumped)

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions