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var.vcf.gz
1035377.4.fna.gz
var.vcf.gz.tbi.gz
- Fastq data from the SRA read archive was downloaded with accession SRR10961160.
- This data was aligned to the given Yersinia pestis genome with Bowtie2 2.2.9.
- FreeBayes v1.3.2-1-gabab37f was run on the alignment files.
- bcftools was used with the following command (with both versions 1.9 and 1.3):
bcftools consensus -c chain -f 1035377.4.fna var.vcf.gz > consensus - A segmentation fault was produced.
Attached are data files that were used to produce the result.
bgzip version 1.9 was used for var.vcf.gz
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