enhancer-prediction

predict enhancers from genomic data

Name		Name	Last commit message	Last commit date
Latest commit History 31 Commits
.ipynb_checkpoints		.ipynb_checkpoints
Enhancer_Prediction		Enhancer_Prediction
__pycache__		__pycache__
images		images
logistic_regression		logistic_regression
summaries		summaries
#csv_generate.py#		#csv_generate.py#
#extract_chromatin_features.py#		#extract_chromatin_features.py#
.gitignore		.gitignore
.gitignore~		.gitignore~
LICENSE		LICENSE
ML_algorithms.py		ML_algorithms.py
Makefile		Makefile
Multivariate_Analysis_NN.ipynb		Multivariate_Analysis_NN.ipynb
README.md		README.md
addFeatureLabels.py		addFeatureLabels.py
addFeatureLabels.pyc		addFeatureLabels.pyc
add_vista_labels.ipynb		add_vista_labels.ipynb
auc.npy		auc.npy
bedGraphToBigWig		bedGraphToBigWig
bw2bg		bw2bg
csv_generate.py		csv_generate.py
data_models_train.ipynb		data_models_train.ipynb
enhancer_train_data.csv		enhancer_train_data.csv
enhancers.csv		enhancers.csv
extract_chrom_features		extract_chrom_features
extract_chrom_features.cpp		extract_chrom_features.cpp
extract_chromatin_features.py		extract_chromatin_features.py
feature_extractor_numpy.ipynb		feature_extractor_numpy.ipynb
feature_matrix_w_labels.npy		feature_matrix_w_labels.npy
features.npy		features.npy
forest.py		forest.py
new_feature_extraction.csv		new_feature_extraction.csv
precision.npy		precision.npy
process		process
process-data.py		process-data.py
process.cc		process.cc
process_all_files.py		process_all_files.py
process_data.sh		process_data.sh
svm.py		svm.py
table.csv		table.csv
train.py		train.py
train_data_fully_processed.csv		train_data_fully_processed.csv
train_nn.py		train_nn.py

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