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  1. Balrog Balrog Public

    Bacterial Annotation by Learned Representation of Genes

    Jupyter Notebook 58 5

  2. PSAURON PSAURON Public

    PSAURON is a machine learning model for rapid assessment of protein coding gene annotation

    Python 39

  3. bolotie bolotie Public

    SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity

    C++ 13 4

  4. BalrogCPP BalrogCPP Public

    Bacterial Annotation by Learned Representation Of Genes (C++ version)

    C++ 8

  5. markraken markraken Public archive

    Can marker representation improve speed and accuracy for metagenomic classification of long reads?

    C++

  6. Smaug Smaug Public archive

    (Sensitive Model-guided Annotation for Unsupervised Gene finding) Can transformers https://en.wikipedia.org/wiki/Transformer_(machine_learning_model) improve upon state-of-the-art bacterial gene fi…

    Jupyter Notebook

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