s4hts / HTStream Public

A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes

s4hts.github.io/htstream/

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 510 Commits
cmake		cmake
common		common
ext/googletest		ext/googletest
hts_AdapterTrimmer		hts_AdapterTrimmer
hts_CutTrim		hts_CutTrim
hts_NTrimmer		hts_NTrimmer
hts_Overlapper		hts_Overlapper
hts_PolyATTrim		hts_PolyATTrim
hts_Primers		hts_Primers
hts_QWindowTrim		hts_QWindowTrim
hts_SeqScreener		hts_SeqScreener
hts_Stats		hts_Stats
hts_SuperDeduper		hts_SuperDeduper
pythonWrapper		pythonWrapper
.gitignore		.gitignore
CMakeLists.txt		CMakeLists.txt
Dockerfile		Dockerfile
LICENSE		LICENSE
README.md		README.md
boost.cmake		boost.cmake

Repository files navigation

HTStream

A toolset for high throughput sequence analysis using a streaming approach facilitated by Linux pipes.

Please see the web page for install and usage instructions: https://ibest.github.io/HTStream/

If you encounter any bugs or have suggestions for improvement, please post them to: https://github.com/ibest/HTStream/issues

Thanks for trying HTStream!