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making boost build static based on BUILD_STATIC_BIN #159

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merged 4 commits into from
Aug 8, 2019
Merged

making boost build static based on BUILD_STATIC_BIN #159

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bec8297
making boost build static based on BUILD_STATIC_BIN
joe-angell Aug 7, 2019
23ec420
fixing default linux flags
joe-angell Aug 7, 2019
6c318c6
moved sets out
samhunter Aug 7, 2019
d459931
fixing non static build
joe-angell Aug 8, 2019
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8 changes: 5 additions & 3 deletions CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -4,14 +4,16 @@ project (HTStream)
option(BUILD_STATIC_BIN "builds static binary (linux only)" OFF)

set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++11 ")
#set(CMAKE_FIND_LIBRARY_SUFFIXES ".a")
set(BUILD_SHARED_LIBS OFF)
set(Boost_USE_STATIC_LIBS ON)

set(Boost_USE_STATIC_LIBS OFF)
set(BUILD_SHARED_LIBS ON)

if (APPLE)
elseif (UNIX)
if (BUILD_STATIC_BIN)
set(EXTRA_BUILD_FLAGS "-static")
set(Boost_USE_STATIC_LIBS ON)
set(BUILD_SHARED_LIBS OFF)
endif()
endif()

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1 change: 0 additions & 1 deletion common/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,6 @@ project (hts_common)
file(GLOB sources "src/*.cpp")
message( status "sources: " ${sources})

set(Boost_USE_STATIC_LIBS ON)
FIND_PACKAGE( Boost 1.56 COMPONENTS system program_options filesystem iostreams REQUIRED )

set(COMMON_INCLUDES ${CMAKE_SOURCE_DIR}/common/src)
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7 changes: 4 additions & 3 deletions hts_AdapterTrimmer/CMakeLists.txt
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Expand Up @@ -11,14 +11,15 @@ set(COMMON_INCLUDES ${CMAKE_SOURCE_DIR}/common/src)
set(PROJECT_LINK_LIBS hts_common)
link_directories(${CMAKE_BINARY_DIR}/common)

set(Boost_USE_STATIC_LIBS ON)
FIND_PACKAGE( Boost 1.56 COMPONENTS system program_options iostreams filesystem REQUIRED )
include_directories(${COMMON_INCLUDES} ${Boost_INCLUDE_DIR} )


add_executable(${PROJECT_NAME} ${sources})
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
if (BUILD_STATIC_BIN)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
endif()
target_link_libraries(${PROJECT_NAME} ${EXTRA_BUILD_FLAGS} ${PROJECT_LINK_LIBS} ${Boost_LIBRARIES})

add_custom_target(valgrind_${PROJECT_NAME}
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7 changes: 4 additions & 3 deletions hts_CutTrim/CMakeLists.txt
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Expand Up @@ -10,14 +10,15 @@ set(COMMON_INCLUDES ${CMAKE_SOURCE_DIR}/common/src)
set(PROJECT_LINK_LIBS hts_common)
link_directories(${CMAKE_BINARY_DIR}/common)

set(Boost_USE_STATIC_LIBS ON)
FIND_PACKAGE( Boost 1.56 COMPONENTS system program_options iostreams filesystem REQUIRED )
include_directories(${COMMON_INCLUDES} ${Boost_INCLUDE_DIR} )


add_executable(${PROJECT_NAME} ${sources})
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
if (BUILD_STATIC_BIN)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
endif()
target_link_libraries(${PROJECT_NAME} ${EXTRA_BUILD_FLAGS} ${PROJECT_LINK_LIBS} ${Boost_LIBRARIES})

add_custom_target(valgrind_cut_trim
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7 changes: 4 additions & 3 deletions hts_NTrimmer/CMakeLists.txt
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Expand Up @@ -11,14 +11,15 @@ set(COMMON_INCLUDES ${CMAKE_SOURCE_DIR}/common/src)
set(PROJECT_LINK_LIBS hts_common)
link_directories(${CMAKE_BINARY_DIR}/common)

set(Boost_USE_STATIC_LIBS ON)
FIND_PACKAGE( Boost 1.56 COMPONENTS system program_options iostreams filesystem REQUIRED )
include_directories(${COMMON_INCLUDES} ${Boost_INCLUDE_DIR} )


add_executable(${PROJECT_NAME} ${sources})
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
if (BUILD_STATIC_BIN)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
endif()
target_link_libraries(${PROJECT_NAME} ${EXTRA_BUILD_FLAGS} ${PROJECT_LINK_LIBS} ${Boost_LIBRARIES})

add_custom_target(valgrind_N_Remover
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7 changes: 4 additions & 3 deletions hts_Overlapper/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -11,14 +11,15 @@ set(COMMON_INCLUDES ${CMAKE_SOURCE_DIR}/common/src)
set(PROJECT_LINK_LIBS hts_common)
link_directories(${CMAKE_BINARY_DIR}/common)

set(Boost_USE_STATIC_LIBS ON)
FIND_PACKAGE( Boost 1.56 COMPONENTS system program_options iostreams filesystem REQUIRED )
include_directories(${COMMON_INCLUDES} ${Boost_INCLUDE_DIR} )


add_executable(${PROJECT_NAME} ${sources})
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
if (BUILD_STATIC_BIN)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
endif()
target_link_libraries(${PROJECT_NAME} ${EXTRA_BUILD_FLAGS} ${PROJECT_LINK_LIBS} ${Boost_LIBRARIES})

add_custom_target(valgrind_${PROJECT_NAME}
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7 changes: 4 additions & 3 deletions hts_PolyATTrim/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -10,14 +10,15 @@ set(COMMON_INCLUDES ${CMAKE_SOURCE_DIR}/common/src)
set(PROJECT_LINK_LIBS hts_common)
link_directories(${CMAKE_BINARY_DIR}/common)

set(Boost_USE_STATIC_LIBS ON)
FIND_PACKAGE( Boost 1.56 COMPONENTS system program_options iostreams filesystem REQUIRED )
include_directories(${COMMON_INCLUDES} ${Boost_INCLUDE_DIR} )


add_executable(${PROJECT_NAME} ${sources})
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
if (BUILD_STATIC_BIN)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
endif()
target_link_libraries(${PROJECT_NAME} ${EXTRA_BUILD_FLAGS} ${PROJECT_LINK_LIBS} ${Boost_LIBRARIES})

add_custom_target(valgrind_${PROJECT_NAME}
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7 changes: 4 additions & 3 deletions hts_QWindowTrim/CMakeLists.txt
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Expand Up @@ -11,14 +11,15 @@ set(COMMON_INCLUDES ${CMAKE_SOURCE_DIR}/common/src)
set(PROJECT_LINK_LIBS hts_common)
link_directories(${CMAKE_BINARY_DIR}/common)

set(Boost_USE_STATIC_LIBS ON)
FIND_PACKAGE( Boost 1.56 COMPONENTS system program_options iostreams filesystem REQUIRED )
include_directories(${COMMON_INCLUDES} ${Boost_INCLUDE_DIR} )


add_executable(${PROJECT_NAME} ${sources})
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
if (BUILD_STATIC_BIN)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
endif()
target_link_libraries(${PROJECT_NAME} ${EXTRA_BUILD_FLAGS} ${PROJECT_LINK_LIBS} ${Boost_LIBRARIES})

add_custom_target(valgrind_${PROJECT_NAME}
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7 changes: 4 additions & 3 deletions hts_SeqScreener/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -11,14 +11,15 @@ set(COMMON_INCLUDES ${CMAKE_SOURCE_DIR}/common/src)
set(PROJECT_LINK_LIBS hts_common)
link_directories(${CMAKE_BINARY_DIR}/common)

set(Boost_USE_STATIC_LIBS ON)
FIND_PACKAGE( Boost 1.56 COMPONENTS system program_options iostreams filesystem REQUIRED )
include_directories(${COMMON_INCLUDES} ${Boost_INCLUDE_DIR} )


add_executable(${PROJECT_NAME} ${sources})
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
if (BUILD_STATIC_BIN)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
endif()
target_link_libraries(${PROJECT_NAME} ${EXTRA_BUILD_FLAGS} ${PROJECT_LINK_LIBS} ${Boost_LIBRARIES})

add_custom_target(valgrind_${PROJECT_NAME}
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7 changes: 4 additions & 3 deletions hts_Stats/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -11,14 +11,15 @@ set(COMMON_INCLUDES ${CMAKE_SOURCE_DIR}/common/src)
set(PROJECT_LINK_LIBS hts_common)
link_directories(${CMAKE_BINARY_DIR}/common)

set(Boost_USE_STATIC_LIBS ON)
FIND_PACKAGE( Boost 1.56 COMPONENTS system program_options iostreams filesystem REQUIRED )
include_directories(${COMMON_INCLUDES} ${Boost_INCLUDE_DIR} )


add_executable(${PROJECT_NAME} ${sources})
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
if (BUILD_STATIC_BIN)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
endif()
target_link_libraries(${PROJECT_NAME} ${EXTRA_BUILD_FLAGS} ${PROJECT_LINK_LIBS} ${Boost_LIBRARIES})

add_custom_target(valgrind_${PROJECT_NAME}
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7 changes: 4 additions & 3 deletions hts_SuperDeduper/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -10,14 +10,15 @@ set(COMMON_INCLUDES ${CMAKE_SOURCE_DIR}/common/src)
set(PROJECT_LINK_LIBS hts_common)
link_directories(${CMAKE_BINARY_DIR}/common)

set(Boost_USE_STATIC_LIBS ON)
FIND_PACKAGE( Boost 1.56 COMPONENTS system program_options iostreams filesystem REQUIRED )
include_directories(${COMMON_INCLUDES} ${Boost_INCLUDE_DIR} )


add_executable(${PROJECT_NAME} ${sources})
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
if (BUILD_STATIC_BIN)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_START_STATIC 1)
set_target_properties(${PROJECT_NAME} PROPERTIES LINK_SEARCH_END_STATIC 1)
endif()

target_link_libraries(${PROJECT_NAME} ${EXTRA_BUILD_FLAGS} ${PROJECT_LINK_LIBS} ${Boost_LIBRARIES})

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