Merge pull request #236 from s4hts/fix_tags_in_discard

Fix tags in discard
s4hts · Aug 17, 2020 · caee236 · caee236
2 parents df133e6 + 6750b20
commit caee236
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/common/src/ioHandler.h b/common/src/ioHandler.h
@@ -379,9 +379,11 @@ class WriterHelper : public ReadVisitor {
         if (!one.getDiscard() && !two.getDiscard()) {
             pe->write(*per);
         } else if (!one.getDiscard() && !no_orphans) { // Will never be RC
+            one.join_comment(two.get_comment());
             se->write_read(one, false);
         } else if (!two.getDiscard() && !no_orphans) { // if stranded RC
-            se->write_read((per->get_read_two()), stranded);
+            two.join_comment(one.get_comment());
+            se->write_read(two, stranded);
         }
 
     }