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update transdecoder version

Status: Open.

#37 In ryandkuster/ragnarok;

· ryandkuster opened on Jan 14, 2026

add masked/unmasked/consensus mode

Status: Open.

#35 In ryandkuster/ragnarok;

· ryandkuster opened on Jan 14, 2026

Implement NCBI-ready Annotation Format

enhancementNew feature or requestNew feature or request

Status: Open.

#31 In ryandkuster/ragnarok;

· zanecolesmith opened on Nov 26, 2025

Add gene descriptors from ENTAP to GFF3

enhancementNew feature or requestNew feature or request

Status: Open.

#25 In ryandkuster/ragnarok;

· zanecolesmith opened on Aug 29, 2025

Stringtie Parallelization

enhancementNew feature or requestNew feature or request

Status: Open.

#24 In ryandkuster/ragnarok;

· zanecolesmith opened on Aug 29, 2025

Refactor pipeline into subworkflows

enhancementNew feature or requestNew feature or request

Status: Open.

#23 In ryandkuster/ragnarok;

· ryandkuster opened on Aug 27, 2025

Allow species input for EDTA

Status: Open.

#22 In ryandkuster/ragnarok;

· ryandkuster opened on Aug 14, 2025

Add gzip testing and handling

enhancementNew feature or requestNew feature or request

Status: Open.

#15 In ryandkuster/ragnarok;

· ryandkuster opened on Jun 27, 2025

include plants.yaml or autodownload as default

Status: Open.

#9 In ryandkuster/ragnarok;

· ryandkuster opened on Jun 9, 2025

longqc and fastp long for iso inputs

enhancementNew feature or requestNew feature or request

Status: Open.

#8 In ryandkuster/ragnarok;

· ryandkuster opened on Jun 9, 2025

add rna evidence option for helixer

enhancementNew feature or requestNew feature or request

Status: Open.

#3 In ryandkuster/ragnarok;

· ryandkuster opened on May 30, 2025