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Recombination

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rprops edited this page Jan 15, 2018 · 1 revision

Testing for recombination in MAG genomes

Software requirements: ClonalFrameML PhiPack

Toggle table of contents Pages 23

Home
01. Software installations
02. Megahit assembly (draft)
03. Binsanity binning (draft)
04. Phylosift
05. Diamond classification
06. Anvi'o
07. iRep
08. Recycler: De novo assembly of plasmids
09. Download genomes NCBI EDI
10. Traitar: from genomes to phenotypes
11. Genome annotation
12. KBase analysis
13. Compute Average Nucleotide Identity (ANI)
14. Detecting genes under positive selection
15. Useful scripts
16. CLARKS taxonomic classification (draft)
18. Sequence discrete populations
19. Submit genomes to IMG
20. Growthpred
21. DESMAN
NCycle analysis (draft)
Recombination
- Testing for recombination in MAG genomes

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