use accession in pigz compression

rpetit3 · Feb 8, 2023 · 98d2310 · 98d2310
1 parent 9bafcfd
commit 98d2310
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/fastq-dl.py b/fastq-dl.py
@@ -154,7 +154,7 @@ def sra_download(accession, outdir, cpus=1, max_attempts=10):
         if outcome == SRA_FAILED:
             return outcome
         else:
-            execute(f"pigz --force -p {cpus} -n --fast *.fastq", directory=outdir)
+            execute(f"pigz --force -p {cpus} -n {accession}*.fastq", directory=outdir)
 
     if os.path.exists(f"{outdir}/{accession}_2.fastq.gz"):
         # Paired end