Bioinformatics DNA searching algorithms-app Using Pyqt6

Table of Contents

1. About
2. Features
3. Technologies
4. Starting
5. collaborators
6. Contact
7. License
8. Author

🎯 About

this is simple desktop app that apply some of DNA searching algorithms, we provide app with easy use desktop GUI using Pyqt6 lib in python.

✨ Features and Used Algorithms

✔️you can apply many operations on DNA string sequence like : ;\

• Search pattern
• Translate sequence to Protien
• DNA reverse
• enter sequence mannually or browse file
• you can choose which algoritms to use :

• • 

• • Naive
• • Boyer-Moore (bad charachter & good suffiux)
• • K-meer indexing
• • K-M-P Algorithm
• • Suffix Array
• • Approximate Matching (Dynamic Programming)

🚀 Technologies

we used python PYQT6 library and pyqt6-tools designer

🏁 Starting

Before starting 🏁 first setup your environment and install the libraries using the following commands:

# setup new environment
$ python -m venv myenv

# activate environment 
$ source myenv/bin/activate #for linux
# or
$ myenv\Scripts\activate #for windows 

# Clone this project
$ git colne https://github.com/romanyn36/DNA-searching-algorithms-pyqt6.git

$ cd DNA-searching-algorithms-pyqt6

# install requirements
$ pip install -r requirements.txt

#to run app
$ python main.py

• to modify the GUI you can use pyqt6-tools designer and open the ui file in the designer and then convert it to python file using the following command:

# open the designer 
$ designer

# convert the ui file to python file
$ pyuic6 -x main.ui -o output.py

# run the app again
$ python main.py

👥 collaborators

• Ziad El-Sayed Abdel-Azim    

• Rawan Abdel-Aziz Ahmed    

📧 Contact

Contact Author Romani

📝 License

This project is under license from MIT. For more details.

 

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