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Add Cerebro logo.
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romanhaa committed Mar 7, 2020
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59 changes: 31 additions & 28 deletions README.md
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# Cerebro

<img align="right" width="35%" height="auto" src="logo_Cerebro.png">

<!-- START doctoc generated TOC please keep comment here to allow auto update -->
<!-- DON'T EDIT THIS SECTION, INSTEAD RE-RUN doctoc TO UPDATE -->
**Table of Contents**

- [Introduction to the Cerebro interface](#introduction-to-the-cerebro-interface)
- [Load data](#load-data)
- [Overview](#overview)
- [Samples](#samples)
- [Clusters](#clusters)
- [Most expressed genes](#most-expressed-genes)
- [Marker genes](#marker-genes)
- [Enriched pathways](#enriched-pathways)
- [Gene expression](#gene-expression)
- [Gene set expression](#gene-set-expression)
- [Trajectory](#trajectory)
- [Gene ID conversion](#gene-id-conversion)
- [Analysis info](#analysis-info)
- [Motivation](#motivation)
- [Installation](#installation)
- [Details: `cerebroApp` R package](#details-cerebroapp-r-package)
- [Details: `romanhaa/cerebro` Docker container](#details-romanhaacerebro-docker-container)
- [Example data sets](#example-data-sets)
- [Conversion of other single cell data formats](#conversion-of-other-single-cell-data-formats)
- [Technical notes](#technical-notes)
- [Building from source](#building-from-source)
- [On macOS](#on-macos)
- [On Windows](#on-windows)
- [Troubleshooting](#troubleshooting)
- [Credits](#credits)
- [Contribute](#contribute)
- [Citation](#citation)
- [License](#license)
- [Cerebro](#cerebro)
- [Introduction to the Cerebro interface](#introduction-to-the-cerebro-interface)
- [Load data](#load-data)
- [Overview](#overview)
- [Samples](#samples)
- [Clusters](#clusters)
- [Most expressed genes](#most-expressed-genes)
- [Marker genes](#marker-genes)
- [Enriched pathways](#enriched-pathways)
- [Gene expression](#gene-expression)
- [Gene set expression](#gene-set-expression)
- [Trajectory](#trajectory)
- [Gene ID conversion](#gene-id-conversion)
- [Analysis info](#analysis-info)
- [Motivation](#motivation)
- [Installation](#installation)
- [Details: `cerebroApp` R package](#details-cerebroapp-r-package)
- [Details: `romanhaa/cerebro` Docker container](#details-romanhaacerebro-docker-container)
- [Example data sets](#example-data-sets)
- [Conversion of other single cell data formats](#conversion-of-other-single-cell-data-formats)
- [Technical notes](#technical-notes)
- [Building from source](#building-from-source)
- [On macOS](#on-macos)
- [On Windows](#on-windows)
- [Troubleshooting](#troubleshooting)
- [Credits](#credits)
- [Contribute](#contribute)
- [Citation](#citation)
- [License](#license)

<!-- END doctoc generated TOC please keep comment here to allow auto update -->

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2 changes: 2 additions & 0 deletions README_for_biologists.md
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# Introduction to Cerebro

<img align="right" width="35%" height="auto" src="logo_Cerebro.png">

This article is meant to give an introduction to Cerebro for people who don't have any bioinformatic skills.
Maybe you are an experimental biologists who performed a scRNA-seq experiment and the computational biologists who analysed the data for you gave you a file and told you to load it into Cerebro.
And, maybe, he/she didn't tell you what Cerebro is and what it can be used for.
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