Merge pull request abhisek247767#61 from kamleshp95/Chest-Disease-Cla…

…ssification

Chest-Disease-Classification-from-Chest-CT-Scan-Image

Chest-Disease-Classification-from-Chest-CT-Scan-Image/.dockerignore

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+.github/
+.jenkins/
+assignments/
+docs/
+flowcharts/
+artifacts/
+logs/
+notebooks/
+venv/

Chest-Disease-Classification-from-Chest-CT-Scan-Image/.dvc/.gitignore

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+/config.local
+/tmp
+/cache

Chest-Disease-Classification-from-Chest-CT-Scan-Image/.dvcignore

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+# Add patterns of files dvc should ignore, which could improve
+# the performance. Learn more at
+# https://dvc.org/doc/user-guide/dvcignore

Chest-Disease-Classification-from-Chest-CT-Scan-Image/.github/workflows/main.yaml

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+name: Trigger Jenkins Job
+
+on:
+  workflow_dispatch:
+
+jobs:
+  trigger:
+    name: Build
+    runs-on: ubuntu-latest
+    steps:
+      - name: Trigger Jenkins Job
+        uses: appleboy/jenkins-action@master
+        with:
+          url: ${{ secrets.URL }}
+          user: ${{ secrets.USER }}
+          token: ${{ secrets.TOKEN }}
+          job: ${{ secrets.JOBS }}

Chest-Disease-Classification-from-Chest-CT-Scan-Image/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/
+research/mlruns/*
+*.zip
+artifacts/*

Chest-Disease-Classification-from-Chest-CT-Scan-Image/.jenkins/Jenkinsfile

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+pipeline {
+  agent any
+  environment {
+    ECR_REPOSITORY = credentials('ECR_REPOSITORY')
+    AWS_ACCOUNT_ID = credentials('AWS_ACCOUNT_ID')
+    AWS_ACCESS_KEY_ID = credentials('AWS_ACCESS_KEY_ID')
+    AWS_SECRET_ACCESS_KEY = credentials('AWS_SECRET_ACCESS_KEY')
+  }
+
+  stages {
+    stage('Continuous Integration') {
+      steps {
+        script {
+          echo "Linting repository"
+          echo "Running unit tests"
+        }
+      }
+    }
+
+    stage('Login to ECR') {
+      steps {
+        script {
+          sh 'aws ecr get-login-password --region us-east-1 | docker login --username AWS --password-stdin ${AWS_ACCOUNT_ID}.dkr.ecr.us-east-1.amazonaws.com'
+        }
+
+      }
+    }
+
+    stage('Build Image') {
+      steps {
+        script {
+          sh 'docker build -t ${ECR_REPOSITORY}:latest .'
+        }
+
+      }
+    }
+
+    stage('Push Image') {
+      steps {
+        script {
+          sh 'docker push ${ECR_REPOSITORY}:latest'
+        }
+
+      }
+    }
+
+    stage('Continuous Deployment') {
+      steps {
+        sshagent(['ssh_key']) {
+          sh "ssh -o StrictHostKeyChecking=no -l ubuntu 44.215.220.137 'cd /home/ubuntu/ && wget https://raw.githubusercontent.com/kamleshp95/Chest-Disease-Classification-from-Chest-CT-Scan-Image/main/docker-compose.yml && export IMAGE_NAME=${ECR_REPOSITORY}:latest && aws ecr get-login-password --region us-east-1 | docker login --username AWS --password-stdin ${AWS_ACCOUNT_ID}.dkr.ecr.us-east-1.amazonaws.com && docker compose up -d '"
+        }
+      }
+    }
+  }
+
+  post {
+    always {
+      sh 'docker system prune -f'
+    }
+  }
+}

Chest-Disease-Classification-from-Chest-CT-Scan-Image/Dockerfile

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+FROM python:3.8-slim-buster
+
+RUN apt update -y && apt install awscli -y
+WORKDIR /app
+
+COPY . /app
+RUN pip install -r requirements.txt
+
+CMD ["python3", "app.py"]

Chest-Disease-Classification-from-Chest-CT-Scan-Image/LICENSE

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+MIT License
+
+Copyright (c) 2024 Ramchandra Tukaram Padwal 
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

Chest-Disease-Classification-from-Chest-CT-Scan-Image/README.md

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+# Chest-Disease-Classification-from-Chest-CT-Scan-Image
+
+- [Data link](https://drive.google.com/file/d/1z0mreUtRmR-P-magILsDR3T7M6IkGXtY/view?usp=sharing)
+
+## Workflows
+
+1. Update config.yaml
+2. Update params.yaml
+3. Update the entity
+4. Update the configuration manager in src config
+5. Update the components
+6. Update the pipeline
+7. Update the main.py
+8. Update the dvc.yaml
+
+
+## Git commands
+
+```
+git add .
+``` 
+
+```
+git commit -m "Updated"
+```
+
+```
+git push origin main
+```
+
+## How to run?
+
+```
+conda create -n chest python=3.8 -y
+```
+
+```
+conda activate chest
+```
+
+```
+pip install -r requirements.txt
+```
+
+```
+python app.py
+```
+
+## Mlflow dagshub connection uri
+
+```
+MLFLOW_TRACKING_URI=https://dagshub.com/kamleshp95/Chest-Disease-Classification-from-Chest-CT-Scan-Image.mlflow \
+MLFLOW_TRACKING_USERNAME=kamleshp95 \
+MLFLOW_TRACKING_PASSWORD=cd33eb294b356173fba2db28335743044a55b13b \
+python script.py
+```
+
+## RUN from bash terminal
+
+```
+export MLFLOW_TRACKING_URI=https://dagshub.com/kamleshp95/Chest-Disease-Classification-from-Chest-CT-Scan-Image.mlflow
+
+export MLFLOW_TRACKING_USERNAME=kamleshp95
+
+export MLFLOW_TRACKING_PASSWORD=cd33eb294b356173fba2db28335743044a55b13b
+```
+
+
+### DVC cmd
+
+```
+1. dvc init
+2. dvc repro
+3. dvc dag
+```