Squashed commit of the following:

commit 91a5580
Author: Neelanjan Mukherjee <nmukherjee@users.noreply.github.com>
Date:   Sun Oct 1 15:56:41 2023 -0600

    update info

commit f0a0617
Author: Neelanjan Mukherjee <nmukherjee@users.noreply.github.com>
Date:   Sun Oct 1 15:50:55 2023 -0600

    add rnaseq intro

    add rnaseq intro

commit 6933aec
Author: Jay Hesselberth <jay.hesselberth@cuanschutz.edu>
Date:   Tue Sep 26 07:28:25 2023 -0600

    styler

commit 5d83e6f
Author: Jay Hesselberth <jay.hesselberth@cuanschutz.edu>
Date:   Tue Sep 26 07:27:27 2023 -0600

    update renv

commit 12681b7
Author: Jay Hesselberth <jay.hesselberth@cuanschutz.edu>
Date:   Tue Sep 26 07:10:58 2023 -0600

    fixups

commit f16855b
Author: Jay Hesselberth <jay.hesselberth@cuanschutz.edu>
Date:   Tue Sep 26 06:53:47 2023 -0600

    port DE exercises

commit afe5988
Author: Jay Hesselberth <jay.hesselberth@cuanschutz.edu>
Date:   Tue Sep 26 05:57:40 2023 -0600

    Port RNA-seq lecture material over

    Lectures from TalioferroLab/teaching are converted to exercises here.

    Need to generate slide material based on subset of lectures.

_freeze/exercises/ex-22/execute-results/html.json

@@ -0,0 +1,14 @@
+{
+  "hash": "a265f2b802dbddd5f42560553b4b5757",
+  "result": {
+    "markdown": "---\ntitle: \"ex 22\"\nsubtitle: \"RNA-sequencing intro\"\nauthor: \"Neelanjan Mukherjee\"\n---\n\n\n\n\n\n## Examine count data {.smaller}\n\n\n::: {.cell output-location='column-fragment'}\n\n```{.r .cell-code}\nd <- read_csv(here(\"data\",\"unfilt_counts.csv.gz\")) |> as.matrix()\n\n\ndf <- tibble(variance=??,\n                mean=??)\n\nggplot(??) +\n        geom_point(aes(x=??, y=??)) + \n        scale_y_log10(limits = c(1,1e9)) +\n        scale_x_log10(limits = c(1,1e9)) +\n        geom_abline(intercept = 0, slope = 1, color=\"red\") +\n  theme_cowplot()\n```\n:::\n\n\n## estimateSizeFactors {.smaller}\n\n\n\n::: {.cell output-location='fragment'}\n\n```{.r .cell-code}\nd <- read_csv(here(\"data\",\"unfilt_counts.csv.gz\")) |> as.matrix()\n\n# estimate size factors\n```\n:::\n",
+    "supporting": [],
+    "filters": [
+      "rmarkdown/pagebreak.lua"
+    ],
+    "includes": {},
+    "engineDependencies": {},
+    "preserve": {},
+    "postProcess": true
+  }
+}

_quarto.yml

@@ -61,6 +61,8 @@ website:
             text: "Bootcamp resources"
           - href: resources/block-dna-resources.qmd
             text: "DNA Block resources"
+          - href: resources/block-rna-resources.qmd
+            text: "RNA Block resources"
 
       - text: "---"      
       - section: "Assignments"