Name		Name	Last commit message	Last commit date
Latest commit History 68 Commits
ARS1_assembly_protocol.md		ARS1_assembly_protocol.md
README.md		README.md
TEMP2_debug.sh		TEMP2_debug.sh
TEMP2_local.sh		TEMP2_local.sh
TEMP2_with_slurm_dm3.sh		TEMP2_with_slurm_dm3.sh
TEMP2_with_slurm_hs37d5.sh		TEMP2_with_slurm_hs37d5.sh
bam2fastq_bedtools		bam2fastq_bedtools
bam2fastq_local_pacbio		bam2fastq_local_pacbio
bam2fastq_with_slurm_pairend		bam2fastq_with_slurm_pairend
change_degenerate_bases.py		change_degenerate_bases.py
download		download
downsample_bam.sh		downsample_bam.sh
downsample_bam_with_slurm.sh		downsample_bam_with_slurm.sh
minimap2_local.sh		minimap2_local.sh
minimap2_with_slurm.sh		minimap2_with_slurm.sh
minimap2_with_slurm_phaCin.sh		minimap2_with_slurm_phaCin.sh
nanovar_with_slurm.sh		nanovar_with_slurm.sh
new_Assemblathon.pl		new_Assemblathon.pl
phaCin.transposon.size		phaCin.transposon.size
run_fasterq-dump		run_fasterq-dump
run_trim_galore		run_trim_galore
super_and_sub.txt		super_and_sub.txt
tldr_with_slurm.sh		tldr_with_slurm.sh
tldr_with_slurm_hs37d5.sh		tldr_with_slurm_hs37d5.sh
tldr_with_slurm_phaCin.sh		tldr_with_slurm_phaCin.sh
upload		upload
upload_all		upload_all