reactome · teslajoy · Dec 20, 2019 · Dec 12, 2019 · Dec 20, 2019 · Dec 20, 2019
diff --git a/docs/analysis.html b/docs/analysis.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Analysis Service &#8212; reactome2py 0.0.5 documentation</title>
+    <title>Analysis Service &#8212; reactome2py 0.0.6 documentation</title>
     <link rel="stylesheet" href="static/alabaster.css" type="text/css" />
     <link rel="stylesheet" href="static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="static/documentation_options.js"></script>

diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: a20ea4cccd35d3ba23f0ea31c4bd4f3c
+config: cffc6d506f7a64f01b2d03cc6062eb52
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/html/_static/documentation_options.js b/docs/build/html/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.0.5',
+    VERSION: '0.0.6',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     FILE_SUFFIX: '.html',

diff --git a/docs/build/html/analysis.html b/docs/build/html/analysis.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Analysis Service &#8212; reactome2py 0.0.5 documentation</title>
+    <title>Analysis Service &#8212; reactome2py 0.0.6 documentation</title>
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>

diff --git a/docs/build/html/content.html b/docs/build/html/content.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Content Service &#8212; reactome2py 0.0.5 documentation</title>
+    <title>Content Service &#8212; reactome2py 0.0.6 documentation</title>
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>

diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
@@ -5,7 +5,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Index &#8212; reactome2py 0.0.5 documentation</title>
+    <title>Index &#8212; reactome2py 0.0.6 documentation</title>
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
@@ -66,11 +66,15 @@ <h2 id="D">D</h2>
 </li>
       <li><a href="analysis.html#reactome2py.analysis.db_version">db_version() (in module reactome2py.analysis)</a>
 </li>
-  </ul></td>
-  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="content.html#reactome2py.content.discover">discover() (in module reactome2py.content)</a>
 </li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="content.html#reactome2py.content.disease">disease() (in module reactome2py.content)</a>
+</li>
+      <li><a href="utils.html#reactome2py.utils.drug_data_source">drug_data_source() (in module reactome2py.utils)</a>
+</li>
+      <li><a href="utils.html#reactome2py.utils.drug_targets">drug_targets() (in module reactome2py.utils)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -119,6 +123,12 @@ <h2 id="G">G</h2>
 <table style="width: 100%" class="indextable genindextable"><tr>
   <td style="width: 33%; vertical-align: top;"><ul>
       <li><a href="utils.html#reactome2py.utils.gene_mappings">gene_mappings() (in module reactome2py.utils)</a>
+</li>
+  </ul></td>
+  <td style="width: 33%; vertical-align: top;"><ul>
+      <li><a href="utils.html#reactome2py.utils.genelist_drug_target">genelist_drug_target() (in module reactome2py.utils)</a>
+</li>
+      <li><a href="utils.html#reactome2py.utils.genelist_fi">genelist_fi() (in module reactome2py.utils)</a>
 </li>
   </ul></td>
 </tr></table>
@@ -201,12 +211,22 @@ <h2 id="P">P</h2>
       <li><a href="content.html#reactome2py.content.participants_reference_entities">participants_reference_entities() (in module reactome2py.content)</a>
 </li>
       <li><a href="analysis.html#reactome2py.analysis.pathway2df">pathway2df() (in module reactome2py.analysis)</a>
+</li>
+      <li><a href="utils.html#reactome2py.utils.pathway_boolean_network">pathway_boolean_network() (in module reactome2py.utils)</a>
 </li>
       <li><a href="content.html#reactome2py.content.pathway_contained_event">pathway_contained_event() (in module reactome2py.content)</a>
+</li>
+      <li><a href="content.html#reactome2py.content.pathway_contained_event_atttibute">pathway_contained_event_atttibute() (in module reactome2py.content)</a>
+</li>
+      <li><a href="utils.html#reactome2py.utils.pathway_drug_target">pathway_drug_target() (in module reactome2py.utils)</a>
 </li>
   </ul></td>
   <td style="width: 33%; vertical-align: top;"><ul>
-      <li><a href="content.html#reactome2py.content.pathway_contained_event_atttibute">pathway_contained_event_atttibute() (in module reactome2py.content)</a>
+      <li><a href="utils.html#reactome2py.utils.pathway_factor_graph">pathway_factor_graph() (in module reactome2py.utils)</a>
+</li>
+      <li><a href="utils.html#reactome2py.utils.pathway_fi">pathway_fi() (in module reactome2py.utils)</a>
+</li>
+      <li><a href="utils.html#reactome2py.utils.pathway_pe_drug_target">pathway_pe_drug_target() (in module reactome2py.utils)</a>
 </li>
       <li><a href="content.html#reactome2py.content.pathways_low_diagram">pathways_low_diagram() (in module reactome2py.content)</a>
 </li>

diff --git a/docs/build/html/index.html b/docs/build/html/index.html
@@ -0,0 +1,132 @@
+
+<!DOCTYPE html>
+
+<html xmlns="http://www.w3.org/1999/xhtml">
+  <head>
+    <meta charset="utf-8" />
+    <title>reactome2py Docs &#8212; reactome2py 0.0.6 documentation</title>
+    <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
+    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+    <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
+    <script type="text/javascript" src="_static/jquery.js"></script>
+    <script type="text/javascript" src="_static/underscore.js"></script>
+    <script type="text/javascript" src="_static/doctools.js"></script>
+    <script type="text/javascript" src="_static/language_data.js"></script>
+    <link rel="index" title="Index" href="genindex.html" />
+    <link rel="search" title="Search" href="search.html" />
+    <link rel="next" title="Analysis Service" href="analysis.html" />
+
+  <link rel="stylesheet" href="_static/custom.css" type="text/css" />
+
+
+  <meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
+
+  </head><body>
+
+
+    <div class="document">
+      <div class="documentwrapper">
+        <div class="bodywrapper">
+
+
+          <div class="body" role="main">
+
+  <div class="section" id="reactome2py-docs">
+<h1>reactome2py Docs<a class="headerlink" href="#reactome2py-docs" title="Permalink to this headline">¶</a></h1>
+<p>The reactome2py package is a library of helper functions that wrap calls to the reactome’s http API endpoints. It also supplies a utility module that simplifies access to reactome open-data.</p>
+<p>The reactome2py package is meant to facilitate communication between reactome tools and services with python.</p>
+<p>If you are getting started with <cite>reactome</cite>, visit our user’s guide page documentation site at  <a class="reference external" href="https://reactome.org/userguide">https://reactome.org/userguide</a></p>
+<p>For more information on API services or data downloads, visit:</p>
+<ul class="simple">
+<li><p><a class="reference external" href="https://reactome.org/dev">https://reactome.org/dev</a></p></li>
+<li><p><a class="reference external" href="https://reactome.org/download-data">https://reactome.org/download-data</a></p></li>
+</ul>
+<div class="toctree-wrapper compound">
+<p class="caption"><span class="caption-text">Contents:</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="analysis.html">Analysis Service</a></li>
+<li class="toctree-l1"><a class="reference internal" href="content.html">Content Service</a></li>
+<li class="toctree-l1"><a class="reference internal" href="utils.html">Utils</a></li>
+</ul>
+</div>
+<div class="section" id="indices-and-tables">
+<h2>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Permalink to this headline">¶</a></h2>
+<ul class="simple">
+<li><p><a class="reference internal" href="genindex.html"><span class="std std-ref">Index</span></a></p></li>
+<li><p><a class="reference internal" href="py-modindex.html"><span class="std std-ref">Module Index</span></a></p></li>
+<li><p><a class="reference internal" href="search.html"><span class="std std-ref">Search Page</span></a></p></li>
+</ul>
+</div>
+</div>
+
+
+          </div>
+
+        </div>
+      </div>
+      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
+        <div class="sphinxsidebarwrapper">
+<h1 class="logo"><a href="#">reactome2py</a></h1>
+
+
+
+
+
+
+
+
+<h3>Navigation</h3>
+<p class="caption"><span class="caption-text">Contents:</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="analysis.html">Analysis Service</a></li>
+<li class="toctree-l1"><a class="reference internal" href="content.html">Content Service</a></li>
+<li class="toctree-l1"><a class="reference internal" href="utils.html">Utils</a></li>
+</ul>
+
+<div class="relations">
+<h3>Related Topics</h3>
+<ul>
+  <li><a href="#">Documentation overview</a><ul>
+      <li>Next: <a href="analysis.html" title="next chapter">Analysis Service</a></li>
+  </ul></li>
+</ul>
+</div>
+<div id="searchbox" style="display: none" role="search">
+  <h3 id="searchlabel">Quick search</h3>
+    <div class="searchformwrapper">
+    <form class="search" action="search.html" method="get">
+      <input type="text" name="q" aria-labelledby="searchlabel" />
+      <input type="submit" value="Go" />
+    </form>
+    </div>
+</div>
+<script type="text/javascript">$('#searchbox').show(0);</script>
+
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+
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+
+
+        </div>
+      </div>
+      <div class="clearer"></div>
+    </div>
+    <div class="footer">
+      &copy;2019, Nasim Sanati.
+
+      |
+      Powered by <a href="http://sphinx-doc.org/">Sphinx 2.2.1</a>
+      &amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.12</a>
+
+      |
+      <a href="_sources/index.rst.txt"
+          rel="nofollow">Page source</a>
+    </div>
+
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+
+  </body>
+</html>
diff --git a/docs/build/html/objects.inv b/docs/build/html/objects.inv
diff --git a/docs/build/html/py-modindex.html b/docs/build/html/py-modindex.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Python Module Index &#8212; reactome2py 0.0.5 documentation</title>
+    <title>Python Module Index &#8212; reactome2py 0.0.6 documentation</title>
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>

diff --git a/docs/build/html/search.html b/docs/build/html/search.html
@@ -4,7 +4,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta charset="utf-8" />
-    <title>Search &#8212; reactome2py 0.0.5 documentation</title>
+    <title>Search &#8212; reactome2py 0.0.6 documentation</title>
     <link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />