Changes to dir structure

rdsza · Feb 29, 2024 · b5a37fe · b5a37fe
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diff --git a/README.md b/README.md
@@ -33,11 +33,11 @@ pip install seaborn
 ```
 ## Downloading the sample cryo-EM data for the notebooks:
 ```bash
-wget -P ~/manifold_learning/manifold_learning/notebooks https://zenodo.org/records/10728025/files/data.zip?download=1
+wget -P ~/manifold_learning https://zenodo.org/records/10728025/files/data.zip?download=1
 ```
 
 ```bash
-cd ~/manifold_learning/manifold_learning/notebooks
+cd ~/manifold_learning
 ```
 
 ```bash

diff --git a/docs/Makefile b/docs/Makefile
diff --git a/docs/README.md b/docs/README.md
diff --git a/docs/_static/README.md b/docs/_static/README.md
diff --git a/docs/_templates/README.md b/docs/_templates/README.md
diff --git a/docs/api.rst b/docs/api.rst
diff --git a/docs/conf.py b/docs/conf.py
diff --git a/docs/getting_started.rst b/docs/getting_started.rst
diff --git a/docs/index.rst b/docs/index.rst
diff --git a/docs/make.bat b/docs/make.bat
diff --git a/manifold_learning/README.md b/manifold_learning/README.md
diff --git a/...old_learning/notebooks/0_initialize.ipynb → notebooks/0_initialize.ipynb b/...old_learning/notebooks/0_initialize.ipynb → notebooks/0_initialize.ipynb
diff --git a/..._learning/notebooks/1_calc-distance.ipynb → notebooks/1_calc-distance.ipynb b/..._learning/notebooks/1_calc-distance.ipynb → notebooks/1_calc-distance.ipynb
diff --git a/...ng/notebooks/1_distance_calculation.ipynb → notebooks/1_distance_calculation.ipynb b/...ng/notebooks/1_distance_calculation.ipynb → notebooks/1_distance_calculation.ipynb
diff --git a/...rning/notebooks/2_manifold_analysis.ipynb → notebooks/2_manifold_analysis.ipynb b/...rning/notebooks/2_manifold_analysis.ipynb → notebooks/2_manifold_analysis.ipynb
diff --git a/...d_learning/notebooks/3_psi_analysis.ipynb → notebooks/3_psi_analysis.ipynb b/...d_learning/notebooks/3_psi_analysis.ipynb → notebooks/3_psi_analysis.ipynb
diff --git a/...old_learning/notebooks/4_nlsa_movie.ipynb → notebooks/4_nlsa_movie.ipynb b/...old_learning/notebooks/4_nlsa_movie.ipynb → notebooks/4_nlsa_movie.ipynb