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1. CLOUD CLOUD Public

   CLOUD is an R implementation of a multi-layer neural network for classifying duplicate gene retention mechanisms and predicting their evolutionary parameters from gene expression data in two specie…

   R 4 2

2. Bridges Bridges Public

   Bridges is a C implementation of a heuristic search algorithm for identifying local similarities in long DNA sequences (Assis and Kondrashov 2010).

   C 1 1

3. PiXi PiXi Public

   PiXi is an R implementation of three machine learning algorithms for predicting gene expression divergence between single-copy orthologs in two species (Piya et al. 2022).

   R

4. ROBRT ROBRT Public

   Forked from radamsRHA/ROBRT

   ROBRT is an R implementation of robust L1, M, S, and MM phylogenetic independent contrast regression estimators for evaluating trait associations on phylogenetic trees (Adams et al. 2023).

   R

5. CLOUDe CLOUDe Public

   Forked from anddssan/CLOUDe

   CLOUDe is an R implementation of three machine learning methods for predicting evolutionary targets and parameters of gene deletion events from expression data in two species (Campelo dos Santos et…

   R