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Adding benchmark notebook for hdbscan soft clustering #5103

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merged 7 commits into from
Jan 31, 2023
Merged

Adding benchmark notebook for hdbscan soft clustering #5103

merged 7 commits into from
Jan 31, 2023

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cjnolet
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@cjnolet cjnolet commented Dec 22, 2022

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@cjnolet cjnolet added doc Documentation non-breaking Non-breaking change labels Dec 22, 2022
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@github-actions github-actions bot added the Cython / Python Cython or Python issue label Dec 22, 2022
@exactlyallan exactlyallan mentioned this pull request Dec 22, 2022
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LGTM, can we also add a visualization of those benchmark results with a graphic?

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cjnolet commented Jan 11, 2023

Also tagging @beckernick here for awareness. This notebook is essentially a modified version of your benchmarking script from the HDBSCAN soft clustering blog. It's super useful, though.

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@cjnolet from a content perspective, this notebook will work great for the website benchmark. Once its merged I will find a system to run this and rapidsai/cugraph#3135 and the cuDF benchmark @quasiben comes up with.

@exactlyallan exactlyallan mentioned this pull request Jan 13, 2023
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Update notebooks/hdbscan_soft_clustering_benchmark.ipynb
62ac825 
Co-authored-by: Micka <9810050+lowener@users.noreply.github.com>
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cjnolet commented Jan 19, 2023

LGTM, can we also add a visualization of those benchmark results with a graphic?

@lowener I think that's a great idea, maybe as a follow-on to improve the presentation. To start us out, this notebook was requested for providing a quick benchmark that can be used on the website.

@cjnolet cjnolet self-assigned this Jan 30, 2023
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Codecov Report

Base: 69.26% // Head: 69.04% // Decreases project coverage by -0.23% ⚠️

Coverage data is based on head (5f621e7) compared to base (de32125).
Patch coverage: 91.11% of modified lines in pull request are covered.

Additional details and impacted files 
@@               Coverage Diff                @@
##           branch-23.02    #5103      +/-   ##
================================================
- Coverage         69.26%   69.04%   -0.23%     
================================================
  Files               192      192              
  Lines             12333    12370      +37     
================================================
- Hits               8543     8541       -2     
- Misses             3790     3829      +39
Impacted Files Coverage Δ
python/cuml/testing/strategies.py 92.85% <90.47%> (-1.22%) ⬇️
...ing/text/stem/porter_stemmer_utils/suffix_utils.py 91.11% <100.00%> (+0.20%) ⬆️
python/cuml/metrics/pairwise_kernels.py 73.22% <0.00%> (-7.88%) ⬇️
python/cuml/feature_extraction/_vectorizers.py 84.38% <0.00%> (-5.65%) ⬇️
...party/sklearn/preprocessing/_column_transformer.py 72.99% <0.00%> (-1.95%) ⬇️

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dantegd commented Jan 31, 2023

/merge

@rapids-bot rapids-bot bot merged commit fb4bab4 into rapidsai:branch-23.02 Jan 31, 2023
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cjnolet commented Jan 31, 2023

@exactlyallan I moved the notebook to notebooks/tools to avoid the notebook tests running it in CI.

jakirkham pushed a commit to jakirkham/cuml that referenced this pull request Feb 27, 2023
@cjnolet
Adding benchmark notebook for hdbscan soft clustering (rapidsai#5103)
7872963 
Authors:
  - Corey J. Nolet (https://github.com/cjnolet)

Approvers:
  - Micka (https://github.com/lowener)
  - Dante Gama Dessavre (https://github.com/dantegd)

URL: rapidsai#5103
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@dantegd dantegd dantegd approved these changes

@lowener lowener lowener approved these changes

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Cython / Python Cython or Python issue doc Documentation non-breaking Non-breaking change
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