New clustering based on new simulations

Author: melkebir

result/sims/machina_sims/cluster_m5.sh

@@ -5,6 +5,12 @@ then
     exit 1
 fi
 
+if [ ! -e input_m5 ]
+then
+    mkdir input_m5
+fi
+
+
 for p in {mS,S,M,R}
 do
     for f in ../../../data/sims/m5/$p/reads_seed*.tsv

result/sims/machina_sims/cluster_m7.sh renamed to result/sims/machina_sims/cluster_m8.sh

@@ -5,12 +5,17 @@ then
     exit 1
 fi
 
+if [ ! -e input_m8 ]
+then
+    mkdir input_m8
+fi
+
 for p in {mS,S,M,R}
 do
-    for f in ../../../data/sims/$p/reads_seed*.tsv
+    for f in ../../../data/sims/m8/$p/reads_seed*.tsv
     do
 	s=$(basename $f .tsv | sed -e s/reads_seed//g)
 	echo Clustering seed $s pattern $p...
-	$1 -a 0.001 -b 0.01 $f > input_m7/cluster_${p}_seed${s}.tsv 2> input_m7/cluster_${p}_seed${s}.txt
+	$1 -a 0.001 -b 0.01 $f > input_m8/cluster_${p}_seed${s}.tsv 2> input_m8/cluster_${p}_seed${s}.txt
     done
 done